Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0790
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43768| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_26792| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.15)             29   4.0  
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_43768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +2

Query: 431 LLSKFVHMYHAIRTEWIK*NLNTIIWSILDTY*ITLSNLAMNRD*LKASVF 583
           +L  +VHM+ +    +I   LN I WS+L T   T+S+L  +   LKA +F
Sbjct: 36  ILRTYVHMFESGTVLFISQILNGIYWSMLGTE--TISDLKDSVGSLKAHLF 84


>SB_26792| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.15)
          Length = 221

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +2

Query: 431 LLSKFVHMYHAIRTEWIK*NLNTIIWSILDTY*ITLSNLAMNRD*LKASVF 583
           +L  +VHM+ +    +I   LN I WS+L T   T+S+L  +   LKA +F
Sbjct: 120 ILRTYVHMFESGTVLFISQILNGIYWSMLGTE--TISDLKDSVGSLKAHLF 168


>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 529 LVGIQNRPNNRI*ISLNPLRTNSVIHMYKFTEQFLPKGSIGLNLKI 392
           +V +Q +  NR+ I    + TNS + + K T +  P G+ G + KI
Sbjct: 166 IVQLQVKKPNRLEIRSVYIETNSFLSLNKLTSENSPAGASGCSRKI 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,357,253
Number of Sequences: 59808
Number of extensions: 371487
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)