Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0789
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 1.3
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.1
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 4.1
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 5.4
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 5.4
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 7.1
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 25 7.1
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 7.1
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 24 9.4
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 24 9.4
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 24 9.4
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -1
Query: 299 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 171
A GT++ +IST +P P++VSGH A R+P+ S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 207 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 70
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 354 FPYLHYSID*RLFTLETCCGYGYEPARHL 268
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 66 RVFDGVTQSGLKTPPRGPGRV 128
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 66 RVFDGVTQSGLKTPPRGPGRV 128
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 236 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 93
P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 617 PLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 24.6 bits (51), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 155 PWNPIEGRYGSEREEHRI 208
P+ P+EG Y + ++ HRI
Sbjct: 3 PYEPVEGLYVNAKQYHRI 20
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 171 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 70
++ GTR L+ K PD+ ++ G + L T
Sbjct: 8 NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 126 LFPDLSAASSGHFGLPRRT 70
LFP +S + G F +PRRT
Sbjct: 386 LFPSVSVENFGCFQVPRRT 404
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 212 RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLK 57
+K + +P HI LL + E + + +++ + SRRR L EH LK
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLK 1085
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 424 VQTRHAPVLRANPYSEVTDPI 362
+++ H +L +PY +V DPI
Sbjct: 287 LKSYHLSILEVDPYFQVNDPI 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,265
Number of Sequences: 5004
Number of extensions: 40922
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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