Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0789
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 4.8
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 4.8
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 27 4.8
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 6.3
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 27 8.3
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 27 8.3
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 27 8.3
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -2
Query: 241 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 113
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 225 IRTPPQMRCSSRSEPYLPSIGFHGT 151
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 201 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 28
C++ P+L I T+ +RQ + P+L +A H + FK E T+P
Sbjct: 80 CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 189 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 37
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 189 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 37
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 189 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 37
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 189 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 37
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 189 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 37
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 189 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 37
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 246 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRT 145
FS S E+ T Q R + S P YLPSIG + T T
Sbjct: 11 FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHT 46
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 221 RILSADLENSGEGCTWRCRAGSYPYPQQVS 310
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 221 RILSADLENSGEGCTWRCRAGSYPYPQQVS 310
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 221 RILSADLENSGEGCTWRCRAGSYPYPQQVS 310
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,142,720
Number of Sequences: 27780
Number of extensions: 239430
Number of successful extensions: 846
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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