Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0789
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07220.1 68414.m00768 expressed protein 40 6e-04
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 1.9
At5g42370.1 68418.m05159 expressed protein 29 1.9
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 1.9
At2g19150.1 68415.m02235 pectinesterase family protein contains ... 29 1.9
At1g60230.1 68414.m06783 radical SAM domain-containing protein ... 29 1.9
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 2.5
At5g22390.1 68418.m02612 expressed protein 27 4.4
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 4.4
At2g05210.1 68415.m00549 expressed protein 27 5.9
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 5.9
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 5.9
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 27 7.7
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 27 7.7
At1g76965.1 68414.m08961 glycine-rich protein 27 7.7
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 27 7.7
>At1g07220.1 68414.m00768 expressed protein
Length = 507
Score = 40.3 bits (90), Expect = 6e-04
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -3
Query: 438 RIRFPSKPDTPRSSEPILIPKLRIQFADFP-YLHYSID*RLFTLETCCGYGYEPARHLHV 262
R+R P K +PRS +L+ L + F F L Y +D + +T G+ EP H+
Sbjct: 6 RLRLPHK-SSPRSPSYLLLCVLALSFFSFTALLFYKVDDFIAQTKTLAGHNLEPTPW-HI 63
Query: 261 HPSPEFSRSAESIRTPPQMRCSSRSEPY 178
P FS + + + ++CS S PY
Sbjct: 64 FPRKSFSAATKHSQAYRILQCSYFSCPY 91
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 236 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 102
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 175 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 65
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 38 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 169
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At2g19150.1 68415.m02235 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 339
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 206 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 307
I GG+ + ++ EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217
>At1g60230.1 68414.m06783 radical SAM domain-containing protein
contains Pfam profile PF04055: radical SAM domain
protein
Length = 458
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 123 FPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLPGXRNR 7
F D+ +AS G R+ L D+G +IETV +P R R
Sbjct: 161 FKDIRSASDG----TRKILFTLDDGLVIETVVIPCDRGR 195
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 231 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 133
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 110 ERSGKSFLFCLSVRVPWNPIEG 175
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 273 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 184
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -3
Query: 231 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 76
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 158 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 39
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 158 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 39
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 237 SAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHF 88
S S PP R SS + S F T+++ Q++ FP + AA HF
Sbjct: 10 SMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57
>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 676
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 192 RSEPYLPSIGFHGTRTLRQKRK 127
R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 447 GTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 355
G + FP KP+ P P +P+L + F D
Sbjct: 94 GAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 338 ILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSGHRR 210
I TR P G++RRD+ST PH +GH +
Sbjct: 15 IQETRTRPQHPPRIAEGSHRRDLSTLRPHFLSGSSSGANGHTK 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,761,069
Number of Sequences: 28952
Number of extensions: 232714
Number of successful extensions: 687
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -