Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0787
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.85 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.85 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.85 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.85 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   1.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   1.1  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   6.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 54   SVLAPSAFFMCETIKSLELIFRGENTSSIFFILLPITLYML 176
            ++L P   F+   + +    F+ +N +S ++ ++PI  +ML
Sbjct: 920  TILGPGTIFLM-LVGAFVAAFQIDNWTSFYYNIIPILFFML 959


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 54   SVLAPSAFFMCETIKSLELIFRGENTSSIFFILLPITLYML 176
            ++L P   F+   + +    F+ +N +S ++ ++PI  +ML
Sbjct: 920  TILGPGTIFLM-LVGAFVAAFQIDNWTSFYYNIIPILFFML 959


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 54   SVLAPSAFFMCETIKSLELIFRGENTSSIFFILLPITLYML 176
            ++L P   F+   + +    F+ +N +S ++ ++PI  +ML
Sbjct: 920  TILGPGTIFLM-LVGAFVAAFQIDNWTSFYYNIIPILFFML 959


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +3

Query: 54   SVLAPSAFFMCETIKSLELIFRGENTSSIFFILLPITLYML 176
            ++L P   F+   + +    F+ +N +S ++ ++PI  +ML
Sbjct: 920  TILGPGTIFLM-LVGAFVAAFQIDNWTSFYYNIIPILFFML 959


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 561 FRFSFSYNLLFSPYNN 608
           F F++ YN  +S YNN
Sbjct: 211 FNFNYQYNQAYSNYNN 226


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 561 FRFSFSYNLLFSPYNN 608
           F F++ YN  +S YNN
Sbjct: 231 FNFNYQYNQAYSNYNN 246


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 571 LFHITFCFRLIIIYKPYQQNNN 636
           LF  +FC  L  IY  +QQ +N
Sbjct: 10  LFFFSFCCILFFIYLYWQQTSN 31


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 521 DNSSRIRQNAEKHNHVPINNTLTI 450
           DN+  + +N EKH+  P   T  I
Sbjct: 195 DNNEILLRNGEKHHSFPFRKTTEI 218


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +1

Query: 565 VFLFHITFCFRLIIIYK-PYQQNNN 636
           + LF I  CF   + YK  Y  NNN
Sbjct: 4   ITLFMIIICFERNLSYKVMYNGNNN 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,531
Number of Sequences: 336
Number of extensions: 3739
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)