Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0787
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26230| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_7783| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              28   9.3  

>SB_26230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 539 SSHKWKDNSSRIRQNAEKHNHVPINNTLTINYXK 438
           +S+ W   S R+ Q  + HN +P  +T+T +Y +
Sbjct: 242 TSYPWNRQSRRVTQGIDSHNELPKESTVTTSYPR 275



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 539 SSHKWKDNSSRIRQNAEKHNHVPINNTLTINYXK 438
           +S+ W   S R+ +  + HN +P  +T+T +Y +
Sbjct: 13  TSYPWNRKSQRVTRGIDCHNELPEKSTVTTSYPR 46


>SB_7783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 539 SSHKWKDNSSRIRQNAEKHNHVPINNTLTINY 444
           +S+ W   S R+    + HN +P+ +T+T +Y
Sbjct: 287 TSYPWNRQSQRVTLVIDSHNELPVESTVTTSY 318


>SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +1

Query: 262 YKLDNKSMKVHFVYLNETKLPFF*INMLIKDSHILSTLSS 381
           Y  +N  +  H+V+L  ++LP   I + I+ +H++ TL++
Sbjct: 683 YNPENLKVLEHYVHLQVSRLPIINILLCIQWNHVIRTLNA 722


>SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 598 GENKRLYEKEKRKCVRNCYKAV 533
           G  K++ EKE+ KCV NC+  V
Sbjct: 198 GRRKKIKEKEQAKCVLNCHLRV 219


>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 681 VPLDCISIIINITFMVIILLVRFI 610
           V  DC+ III IT M+II++   I
Sbjct: 664 VKADCVIIIITITIMIIIIITIII 687


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 152  KYEKYTRCILASKNELQTFYC-LAHKKCTRSENAPSFTSIYT*ATQRTLET 3
            KY+ Y+  I  +    Q F+  L H  CT  ++    T IYT    R + T
Sbjct: 1168 KYDSYSTRIYTTTRVRQLFHAYLRHDTCTTGQHDSYSTRIYTTTRVRQVNT 1218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,649,880
Number of Sequences: 59808
Number of extensions: 419230
Number of successful extensions: 846
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)