Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0787
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical...    31   0.66 
AF125954-4|AAD14710.1|  337|Caenorhabditis elegans Seven tm rece...    31   1.2  
AC006769-5|AAF60577.2|  339|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U53147-1|AAA96112.1|  132|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z75712-11|CAB00044.2|  257|Caenorhabditis elegans Hypothetical p...    28   8.1  

>AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical
           protein Y102A5C.28 protein.
          Length = 344

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -2

Query: 449 NYXKLTLQLTIFXVSFNNTSVVQEDKVLSMCESFINMLI*KKGSF 315
           NY  L + L+IF +S+    VV E  VLS+ +SF+ ++  K  SF
Sbjct: 37  NYKYLLIGLSIFEMSYAVLDVVSETTVLSIKKSFVVVVPYKDRSF 81


>AF125954-4|AAD14710.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 119 protein.
          Length = 337

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 493 AFCLIRELLSFHL*LLYNNS*RIFVFLFHITFCFRLIIIYKPYQQNNNHECYIYYY 660
           +F    ++L FH+   Y +S  + V L    FC+R + + +P+   N     + Y+
Sbjct: 76  SFLRYEKVLGFHITAFYCSSFGVCVLLLSTHFCYRYMAVCRPHIVRNYTGARLLYF 131


>AC006769-5|AAF60577.2|  339|Caenorhabditis elegans Hypothetical
           protein Y45G12C.10 protein.
          Length = 339

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 493 AFCLIRELLSFHL*LLYNNS*RIFVFLFHITFCFRLIIIYKPYQQNNNHECYIYYY 660
           +F    ++L FH+   Y +S  + V L    FC+R + + +P+   N     + Y+
Sbjct: 78  SFLRYEKVLGFHITAFYCSSFGVCVLLLSTHFCYRYMAVCRPHIVRNYTGARLLYF 133


>Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical
           protein C55A1.1 protein.
          Length = 266

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 449 NYXKLTLQLTIFXVSFNNTSVVQEDKVLSMCESFI 345
           NY  L + +++F +S+    +V E  VLS+ ESF+
Sbjct: 3   NYKHLLIGVSVFEMSYAVLDIVSETTVLSIKESFV 37


>Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical
           protein F59A1.15 protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 60  LAPSAFFMCETIKSLELIFRGENTSSIFFILLPITLYMLHDFLM 191
           LA  AFF  ETIK  EL+F  +    +    L   L ++  FLM
Sbjct: 353 LAVDAFFEAETIKHAELMFFEKTLIPMTSYTLSAILLLILSFLM 396


>U53147-1|AAA96112.1|  132|Caenorhabditis elegans Hypothetical
           protein C01B7.3 protein.
          Length = 132

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 103 WSSFLEARIHRVYFSYFYRLHYTCYTIF*CEVAVKIFILLTCDTKK 240
           W   L ARIHR+      R H++  T   C+ A KI I +T  ++K
Sbjct: 63  WGILLAARIHRI----IQRAHFSHGTKTCCDKADKIAIQMTMKSEK 104


>Z75712-11|CAB00044.2|  257|Caenorhabditis elegans Hypothetical
           protein K04G2.7 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 122 REYIEYIFHTFTDYIIHATRFFDVKWL*R--SSFCLLVTPKN 241
           +EY +Y+ +     I    +FFD  WL R    +C+ + P++
Sbjct: 156 KEYAQYVAYQLHPEIPDIAKFFDANWLYRFKRRYCVELKPRS 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,500,024
Number of Sequences: 27780
Number of extensions: 334545
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)