Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0786
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0012 - 20221635-20221954,20221988-20222064,20222580-202226...    29   3.0  
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026     29   3.9  
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    28   6.9  
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   9.1  
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501...    28   9.1  
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660...    28   9.1  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   9.1  

>09_06_0012 -
           20221635-20221954,20221988-20222064,20222580-20222698,
           20223244-20223558
          Length = 276

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
 Frame = -3

Query: 700 WWIQVRGEVGLARCAAPSAPSGRTATNAF-----HGVP*AFFRRLNTTFGSSHSASSAYQ 536
           WW +VRGEV    C     P  R     +     HG      R   +T     + S  Y 
Sbjct: 156 WWFEVRGEVEF--CFPEGRPLKRLGRRVYSSEHIHGWDIKPVRFQLSTSDGQQAQSKCYL 213

Query: 535 NWP-TWHRHQISGFIVRVS 482
             P  W  H +  F+V+ S
Sbjct: 214 TDPGVWINHHVGDFVVKSS 232


>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
          Length = 585

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 628 LSSLTEPREPRTVLAR--PRPVPESTTSRPHEPTIGFRKNLIT 750
           LSSL E R  R  + R  PRP P + +S   EP       LIT
Sbjct: 48  LSSLQESRSARIRIPRDEPRPTPPARSSSREEPRFVAETKLIT 90


>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 542 LPKLAHLAPSSDLRLHRSSKPEFSPI 465
           L  L +LAP  DLR+  SSKP F  I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 281 KSIVGTGYRGERLIEPSSSWFRPKFPSG 364
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>04_03_0897 -
           20646750-20646918,20647927-20648038,20649650-20650108,
           20650237-20650330,20650449-20650525,20650637-20650688,
           20650770-20650927,20651191-20651281,20651465-20652529
          Length = 758

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 208 DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 318
           DG+  +V + SGE    D+S  ++Q+D+  ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472


>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
            13266361-13266623,13267637-13267847,13268420-13268590,
            13268671-13268748,13269275-13269520,13269763-13271868,
            13272122-13273904,13274113-13274216,13274752-13275108,
            13275210-13275328,13276175-13276436,13276669-13276893,
            13277075-13277214,13278087-13278159,13278431-13278532,
            13278647-13279018,13279183-13279230,13279516-13279900,
            13280440-13280558
          Length = 2574

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/92 (23%), Positives = 36/92 (39%)
 Frame = -3

Query: 733  GSRWLVHEVVRWWIQVRGEVGLARCAAPSAPSGRTATNAFHGVP*AFFRRLNTTFGSSHS 554
            G+R  +  VV+    +  E    R    +A SGR    +FH +            GSS+ 
Sbjct: 1820 GTRHFMVNVVQPQFNLHSEEANGRFLL-AAGSGRVLVRSFHSIVHVGQEMFEKALGSSNV 1878

Query: 553  ASSAYQNWPTWHRHQISGFIVRVSRSSHPFKV 458
            A    +   +W R+++S  +  V     P  V
Sbjct: 1879 AIGETRPEMSWSRYEVSVMLEHVQAHVAPTDV 1910


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 462 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 301
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,874,927
Number of Sequences: 37544
Number of extensions: 506959
Number of successful extensions: 1333
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)