Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0785
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 184 4e-47
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 183 8e-47
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 31 0.71
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 28 6.6
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 28 6.6
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 28 6.6
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 28 6.6
U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical pr... 27 8.7
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 27 8.7
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 27 8.7
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 27 8.7
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 184 bits (449), Expect = 4e-47
Identities = 88/145 (60%), Positives = 112/145 (77%), Gaps = 2/145 (1%)
Frame = +2
Query: 89 SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYED 268
SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V IDIF KK ED
Sbjct: 50 SGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLED 109
Query: 269 ICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDS 445
ICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG +R +
Sbjct: 110 ICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGNTIREALEK 168
Query: 446 GK-ELLCTVLKSCGEECVIAVKANT 517
+ +L V+ +CGEE ++ K +T
Sbjct: 169 DEGSVLVQVVAACGEEAILGYKIST 193
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 183 bits (446), Expect = 8e-47
Identities = 89/145 (61%), Positives = 111/145 (76%), Gaps = 2/145 (1%)
Frame = +2
Query: 89 SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYED 268
SGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V IDIF KK ED
Sbjct: 16 SGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLED 75
Query: 269 ICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDS 445
ICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG Q+R ++
Sbjct: 76 ICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIRDAYEK 134
Query: 446 GK-ELLCTVLKSCGEECVIAVKANT 517
+ +L V+ + GEE ++ K +T
Sbjct: 135 DEGSVLVQVVSAIGEEAILGWKVST 159
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 31.1 bits (67), Expect = 0.71
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 287 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 457
N +P +K++ Y L ++ GY+ + GDL+ KI D LR D ++ G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629
Query: 458 LCTVLKSCGEEC 493
++K CG++C
Sbjct: 630 HAALVKECGDKC 641
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +2
Query: 242 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 397
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 347 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 463
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 69 TLRDRXTPGPQPPSPCNVRPCVKTV 143
T + TPGP P +PC+ P V T+
Sbjct: 168 TTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 69 TLRDRXTPGPQPPSPCNVRPCVKTV 143
T + TPGP P +PC+ P V T+
Sbjct: 32 TTTNYSTPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 69 TLRDRXTPGPQPPSPCNVRPCVKTV 143
T + TPGP P +PC+ P V T+
Sbjct: 186 TTTNYSTPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 69 TLRDRXTPGPQPPSPCNVRPCVKTV 143
T + TPGP P +PC+ P V T+
Sbjct: 168 TTTNYSTPGPSPMAPCSAGPDVLTL 192
>U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical
protein W09C3.4 protein.
Length = 296
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 510 ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILR 391
ALT+MT PQ NSL SK + + ++P G+LR
Sbjct: 33 ALTSMTPGLPQTVRQTAINSLLSSKKL--AIQQAPGGVLR 70
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -2
Query: 409 TIRDFEVLTQVTVVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDINPN 230
T D LTQV V H GQ+ ++ I++ + L G V G D++ IE++
Sbjct: 137 TTVDAGQLTQVEVEKHGGQL-VVTKINEKSNYDLKPGDVITQVDGKDVYFRADIENLK-G 194
Query: 229 QVNFSVAVLSGFGCGHFN 176
+V +V +G C N
Sbjct: 195 KVELTVEP-AGIHCAPAN 211
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 369 TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 509
T +TC T+ + + ++SC CC C NP + P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 369 TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 509
T +TC T+ + + ++SC CC C NP + P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,938
Number of Sequences: 27780
Number of extensions: 342676
Number of successful extensions: 923
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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