Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0785
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   189   2e-48
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   183   8e-47
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...   181   4e-46
At1g56345.1 68414.m06477 pseudouridine synthase family protein l...    29   2.0  
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ...    29   2.7  
At3g05830.1 68416.m00654 expressed protein                             29   3.5  
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea...    28   6.2  
At3g12240.1 68416.m01527 serine carboxypeptidase S10 family prot...    28   6.2  
At3g06490.1 68416.m00753 myb family transcription factor (MYB108...    28   6.2  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    27   8.2  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    27   8.2  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  189 bits (460), Expect = 2e-48
 Identities = 83/148 (56%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
 Frame = +2

Query: 68  HTSRPXXSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIF 247
           H      +GAS T+P Q   +RKNG++++K RPCK+VE+STSKTGKHGHAK H V IDIF
Sbjct: 6   HHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIF 65

Query: 248 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LGTQ 424
             KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG  ++DLK+P+ D L  Q
Sbjct: 66  TSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQ 125

Query: 425 LRTDFDSGKELLCTVLKSCGEECVIAVK 508
           +++ FD GK+L+ +V+ + GEE + A+K
Sbjct: 126 IKSGFDDGKDLVVSVMSAMGEEQINALK 153


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  183 bits (446), Expect = 8e-47
 Identities = 82/148 (55%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
 Frame = +2

Query: 68  HTSRPXXSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIF 247
           H      +GAS T+P Q   +RK G +++KGRPCK+VE+STSKTGKHGHAK H V IDIF
Sbjct: 6   HHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIF 65

Query: 248 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQ 424
             KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG  ++DLK+P D  L TQ
Sbjct: 66  TSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQ 125

Query: 425 LRTDFDSGKELLCTVLKSCGEECVIAVK 508
           L+  F+ GK+++ +V+ + GEE + A+K
Sbjct: 126 LKNGFEEGKDIVVSVMSAMGEEQMCALK 153


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score =  181 bits (440), Expect = 4e-46
 Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
 Frame = +2

Query: 68  HTSRPXXSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIF 247
           H      SGAS T+P     +RK G +++K RPCK+VE+STSKTGKHGHAK H V IDIF
Sbjct: 6   HHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIF 65

Query: 248 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQ 424
             KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G  ++DLK+P D  L  Q
Sbjct: 66  TAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQ 125

Query: 425 LRTDFDSGKELLCTVLKSCGEECVIAVK 508
           +R  FD GK+++ +V+ S GEE + AVK
Sbjct: 126 MRLGFDEGKDIVVSVMSSMGEEQICAVK 153


>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 322

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -2

Query: 472 QHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQ-VTVVSHQGQVAIIRDISQLVVFALHVGY 296
           +HGA +  AA++V   L     +RD E   + V+V S + +   + D++ ++V     G 
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAE---GE 232

Query: 295 VHVVCGGTD 269
             + CGG D
Sbjct: 233 RELSCGGDD 241


>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 591

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 392 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 493
           L IPDGD  T L      G   +C  L SCG  C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445


>At3g05830.1 68416.m00654 expressed protein
          Length = 336

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +2

Query: 215 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 394
           AK  + G+D    K  ED+ P         V+ +D ++T + D+  + LM  +G  +   
Sbjct: 186 AKAGIGGMDSELQKLLEDVSPMKFERMNRLVEVKDEEITKLKDE--IRLM--SGQWKHKT 241

Query: 395 KIPDGDLGTQLRTDFDSGKELL 460
           K  +  L  Q RTD D  K++L
Sbjct: 242 KELESQLEKQRRTDQDLKKKVL 263


>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           GTP-binding protein beta chain homolog, Nicotiana
           tabacum, PIR:T16970
          Length = 438

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 520 SCVCFDGDDALLTAGFQHGA 461
           +C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143


>At3g12240.1 68416.m01527 serine carboxypeptidase S10 family protein
           contains Pfam profile: PF00450 serine carboxypeptidase;
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 436

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -2

Query: 379 VTVVSHQGQVAIIRDISQL---VVFALHVGYVHVVCGGTD-IFILFTIEDINPNQVNFSV 212
           + ++ H    +IIR +      + F L  GY+ V     D +F  F   + NP +    V
Sbjct: 16  LVLIQHADSSSIIRYLPGFEGPLPFELETGYIGVGQKEEDQLFYYFIKSENNPEEDPLLV 75

Query: 211 AVLSGFGCGHFNNLAW 164
            +  G GC  F+ L +
Sbjct: 76  WLTGGPGCSSFSGLVY 91


>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
           identical to transcription factor MYB108 GI:15375290
           from [Arabidopsis thaliana]
          Length = 323

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 165 HARLLKCPHPKPESTATLKFTWLGLISSMVKSMKIS--VPPHTTWTYPT*SAKTTN 326
           HA+ LKC     +   T+K+ W+  +   ++S   S      TT T  T SA T++
Sbjct: 122 HAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSS 177


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 305 VKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL-GTQLRTDFDSGKE 454
           V+R+  +++      Y  L ADN    +   +  G + GT+++T+FDS +E
Sbjct: 350 VRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEE 400


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
            SP|P35207 Antiviral protein SKI2 {Saccharomyces
            cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
            box helicase, PF00271: Helicase conserved C-terminal
            domain
          Length = 1347

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = +2

Query: 335  ISDDGYLTLMADNG--DLREDLKIPDGDLGTQLR----TDFDSGKELLCTV 469
            +SD+  L + A  G  D+ +++   D DL  Q++     + +SG+EL+CTV
Sbjct: 1141 MSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICTV 1191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,211,073
Number of Sequences: 28952
Number of extensions: 315621
Number of successful extensions: 900
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)