Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0784
         (818 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CF9F6 Cluster: hypothetical protein TTHERM_0042...    38   0.30 
UniRef50_A7B1M8 Cluster: Putative uncharacterized protein; n=1; ...    37   0.53 
UniRef50_UPI000150A8EF Cluster: hypothetical protein TTHERM_0042...    35   2.8  
UniRef50_UPI0001560F71 Cluster: PREDICTED: similar to zinc finge...    34   5.0  
UniRef50_UPI00015A6A91 Cluster: UPI00015A6A91 related cluster; n...    34   5.0  
UniRef50_Q7T918 Cluster: Polyprotein; n=2; Yokose virus|Rep: Pol...    33   8.7  
UniRef50_Q5HQ55 Cluster: Putative uncharacterized protein; n=1; ...    33   8.7  

>UniRef50_UPI00006CF9F6 Cluster: hypothetical protein
           TTHERM_00420820; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00420820 - Tetrahymena
           thermophila SB210
          Length = 523

 Score = 37.9 bits (84), Expect = 0.30
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = +2

Query: 434 KYMVIIVSVHILPPR*Y---FKTVVSCEQFEFV*YYYINRILLSFNLMFY*IYLRLIFKN 604
           KYM++ +S++++ P  +   +K     + F+   Y+Y+N ILL   L+   I ++++  N
Sbjct: 161 KYMILEMSIYLIFPNPWLTDYKVYFFVDYFQMEVYHYLNEILLLIMLLRILIMVKIVLIN 220

Query: 605 V*WYS 619
             WY+
Sbjct: 221 TQWYT 225


>UniRef50_A7B1M8 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus gnavus ATCC 29149|Rep: Putative
           uncharacterized protein - Ruminococcus gnavus ATCC 29149
          Length = 607

 Score = 37.1 bits (82), Expect = 0.53
 Identities = 27/139 (19%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
 Frame = +3

Query: 45  FGAVVTLIVSVEMDFRLLLLCCLYIAVVAAAFPSETRNIEKRDVMES--MKNAWNEVVKT 218
           F A +  +++    F  +LL  L I ++   F      +    + E   + N+ + + + 
Sbjct: 44  FSAAIGAVIANRNQFAKILLVILAILLLPVLFIVMLPGLIFGSLTEQSDVLNSNSMISEN 103

Query: 219 LSDAGDAVVHVFKPTEKSVIDKMADSVKSLTQ*PV*LISTPYNY----NSNIVVDELC-- 380
           +  + DA+V V + + + ++ ++  ++  L Q     I+ PY Y    N+N+++ + C  
Sbjct: 104 IRASRDAIVEVLEESHEDILAEIHAAISRLPQGDTASINDPYTYSISVNANLLISQFCAS 163

Query: 381 RWDHQILLINRNKHILDQN 437
           + D++ + +N+ K ++ +N
Sbjct: 164 QDDYKNINLNQLKKLIREN 182


>UniRef50_UPI000150A8EF Cluster: hypothetical protein
           TTHERM_00420830; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00420830 - Tetrahymena
           thermophila SB210
          Length = 501

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +2

Query: 434 KYMVIIVSVHILPPR*YF---KTVVSCEQFEFV*YYYINRILLSFNLMFY*IYLRLIFKN 604
           K M++ + V ++ P+ +F   K     + ++   Y+Y+N ILL F L  + +  +++  N
Sbjct: 169 KLMLLEMLVFVVFPQPWFSDIKLYFFVDYYQIQVYHYLNEILLLFMLFRFFVMAKIVLMN 228

Query: 605 V*WYS 619
             WYS
Sbjct: 229 TQWYS 233


>UniRef50_UPI0001560F71 Cluster: PREDICTED: similar to zinc finger
           protein 709; n=1; Equus caballus|Rep: PREDICTED: similar
           to zinc finger protein 709 - Equus caballus
          Length = 1224

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 116 YRCCGSSFSIRNEEYRET*CH-GIHEECLERSREDPKRCWRCGRSRIQANRKECH 277
           YR CG  F   +  Y    CH G+  +  +   E P +C +CGR+ I  +  + H
Sbjct: 115 YRACGKVFMRHSPLYGHIRCHTGLKPDEYQTDGEKPYKCKKCGRTFIYHHTFQRH 169


>UniRef50_UPI00015A6A91 Cluster: UPI00015A6A91 related cluster; n=1;
           Danio rerio|Rep: UPI00015A6A91 UniRef100 entry - Danio
           rerio
          Length = 384

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +1

Query: 436 IHGNNCFCTHSSPAMIF*DCCLM*TV*ICLILLY*SYFIVF*FNVLLNLPTFNIQERLMV 615
           +H   C C H + + I    CL  T  I   L Y S+  +F   +LL    + + + + V
Sbjct: 141 MHNFICICLHYASSCIILFACLHYTSFILSCLYYASFIFLFTLYILLFAYIYIMHQSICV 200

Query: 616 FI-----LSICSRYLCIRYKHV*TTHFXL 687
           F+     +S+C  Y    Y H+ T H  +
Sbjct: 201 FLEYASFISLCLHYASF-YLHLFTLHIII 228


>UniRef50_Q7T918 Cluster: Polyprotein; n=2; Yokose virus|Rep:
           Polyprotein - Yokose virus
          Length = 3425

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 99  LLCCLYIAVVAAAFPSETRNIEKRDVMESMK-NAWNEVV 212
           ++ C+ + +VA A+ +   N+EKRD ++S   ++W  VV
Sbjct: 282 IIICILLLLVAPAYSTHCTNVEKRDFLQSTSGSSWTTVV 320


>UniRef50_Q5HQ55 Cluster: Putative uncharacterized protein; n=1;
           Staphylococcus epidermidis RP62A|Rep: Putative
           uncharacterized protein - Staphylococcus epidermidis
           (strain ATCC 35984 / RP62A)
          Length = 44

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -1

Query: 734 LKKYMFIH*IQTIATDKXKCVVYTCLYLIQRYRE 633
           +K Y+F+  I+ IAT K   ++YT  YL+ +Y++
Sbjct: 2   IKIYLFVDLIKHIATKKRSYLLYTSTYLLNKYKQ 35


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,996,423
Number of Sequences: 1657284
Number of extensions: 13927124
Number of successful extensions: 29073
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29063
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 71200899835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)