Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0784
         (818 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.41 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   2.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   3.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.9  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   8.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 527 YYYINRILLSFNLMFY*IYLRLIFKNV*WYSFFQF-AHDIFVLDI-NMYKPHIFXC 688
           Y+Y   I+ + +L+FY + + L+     +Y+F  F  H + ++ I   Y  H+  C
Sbjct: 214 YFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFC 269


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 327 LISTPYNYNSNIVVDELCR 383
           LI+  YN+N N +  +LC+
Sbjct: 419 LITPFYNFNENTIHSKLCK 437


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 390 DPNDTIHPQRYCCCNYKVLKSIKPV 316
           DP   + P  + C NY  L  + P+
Sbjct: 159 DPGPALPPTGFLCNNYPPLPQVPPL 183


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 390 DPNDTIHPQRYCCCNYKVLKSIKPV 316
           DP   + P  + C NY  L  + P+
Sbjct: 159 DPGPALPPAGFLCNNYLPLPQVPPL 183


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 442 GNNCFCTH 465
           G NC CTH
Sbjct: 563 GQNCMCTH 570


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 42  LFGAVVTLIVSVEMDFRLLLLCCLYIAV 125
           LFG ++TL +  E+D     +C   + V
Sbjct: 149 LFGDLLTLFIKEELDLVWREVCTFVVQV 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,921
Number of Sequences: 336
Number of extensions: 4116
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)