Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0784
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48940| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_6198| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)                  29   6.0  
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_48940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = +3

Query: 174 VMESMKNAWNEVVKTLSDAGDAVVHVFKPTEKSVIDKMADSVKSLTQ 314
           ++E  K A   +++ + D G+ V    K ++KS+  ++ DSVKS+++
Sbjct: 86  LLEEWKKADVNLLREIRDVGNVVSKEIKDSKKSISKEIQDSVKSVSK 132


>SB_6198| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)
          Length = 347

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 66  IVSVEMDFRLLLLCCL-YIAVVAAAFPSETRNIEKRDVMESMKNAWNEVVKTL 221
           + S+ + + L L+C L YI V  A   +E R      +  S+ + W EVV+TL
Sbjct: 237 VTSMFLVYCLFLVCYLPYIIVQTAILVTELRLFSDPSIHSSL-SVWGEVVETL 288


>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +2

Query: 209 REDPKRCWRCGRS----RIQANRKECHR*NGR 292
           RED K C RCG S      +A  KEC + NG+
Sbjct: 306 REDRKTCGRCGSSHKPKECKAFGKECFKCNGK 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,173,484
Number of Sequences: 59808
Number of extensions: 453792
Number of successful extensions: 1063
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)