Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0783
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   4.5  
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    26   6.0  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   6.0  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 456 DTRHQYVNYILVGTRGTKSFLQNGNFG 376
           ++RH   +YI+V + G +  L +G FG
Sbjct: 431 ESRHHIPHYIIVNSGGIRGGLNSGAFG 457


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 663 LHVICSSGFL-IAFPNTLSDGAPVGVVASIDMIVKPNEVIVNPSLRFKNQSRKGRIRREM 487
           L V C  G + + FP  + +G  +GV  S +++ K  E     +LR +   +K +I    
Sbjct: 45  LDVGCGPGTITVGFPKYVPEGEVIGVEPSQELLDKAEE-----ALRKEETLKKEKINNCS 99

Query: 486 FRVKS 472
           FR+ S
Sbjct: 100 FRLGS 104


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 648 SSGFLIAFPNTLSDGAPVGVVASIDMIVKPNEVIVNPSLRFKNQS 514
           +S F     N+L D      +  IDM+ K N+ I  PSL+ ++ S
Sbjct: 290 NSDFGACNDNSLDDLFQASPIKPIDMLPKINKDIAFPSLKVRSPS 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,733
Number of Sequences: 5004
Number of extensions: 51306
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)