Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0783
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0012 - 11791524-11791957,11792014-11792108,11792163-117922...    29   3.5  
03_01_0592 + 4372190-4372325,4373646-4373704,4374245-4374355,437...    28   8.2  

>10_07_0012 -
           11791524-11791957,11792014-11792108,11792163-11792226,
           11792327-11792591,11792670-11793127,11793271-11793592
          Length = 545

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 532 QTGIHDYFVRLDDHIYRRDNTHRRTVR*CIGESD*KTRGTYYVQRLR 672
           QT +H +  R+ D I  R+       R C+G    KTR ++ VQ  R
Sbjct: 231 QTNLHSFARRMLDIIISREAKEAAETRACLGMPITKTRWSFVVQMSR 277


>03_01_0592 +
           4372190-4372325,4373646-4373704,4374245-4374355,
           4374441-4374800
          Length = 221

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 484 KHFSANSPLSGLVLKPQTGIH 546
           KHF A S L GL+ KP   +H
Sbjct: 5   KHFEAQSTLMGLICKPTRELH 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,402,002
Number of Sequences: 37544
Number of extensions: 279461
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)