Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0782
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   4.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   5.4  
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    25   9.5  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.5  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 290 KALGVDFILIVIICVNVSPKYGSDTLINL 376
           K LG+DF + +++C     +YGS+ L +L
Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 19  EPKPTSPARGAPCRPTNEALARR 87
           EP P S A  +P + + EALA R
Sbjct: 64  EPSPASSASASPVKKSAEALAER 86


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 633 TANGIGFXTYRVLSP-IHSTLI*LTATSYRMSRLIKIHVYHGIAPTIT 493
           T NG G  T+      IH  LI L + S  + ++  IH+  G+   +T
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVT 115


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 108 DGGSVTTTPRQSLVCWSAGCAAC 40
           DG  V   P + L C  +GCA C
Sbjct: 50  DGIRVPPKPEEPLNCCQSGCAIC 72


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 631 CEWYRVFXVSSIKSYTFNLNLTYSYELS 548
           C +YR F  S   S  F L++ + Y+L+
Sbjct: 518 CHYYRFFRTSHTISRKFMLSIEFIYQLA 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,887
Number of Sequences: 5004
Number of extensions: 45267
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)