Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0779
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    93   1e-20
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    26   1.9  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    25   3.3  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    24   7.6  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    24   7.6  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    24   10.0 

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 93.1 bits (221), Expect = 1e-20
 Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
 Frame = +1

Query: 25  RVVAEPGRYFXXXXXXXXXMVHSKREIPAKEGEDADTHTMYFINDGVYGSFNCVLYDHQI 204
           RV++EPGR+F          V +KR++      D +   MY++NDGVYGS NC+L+DHQ 
Sbjct: 292 RVISEPGRFFVSSSFTLAVNVIAKRKL------DDEEKVMYYVNDGVYGSLNCILFDHQH 345

Query: 205 VSAEPLHDRADALLP---------CSVWGPSCDALDCVMESALLP-PLDAGDWLVFRDMG 354
             A  L   +  +           C +WGP+CD+LD +   A LP  L+ GDW+ F D G
Sbjct: 346 PVARVLKCGSRFVYNDLVGTGQHRCFIWGPTCDSLDVIANDAHLPYELNVGDWIYFEDAG 405

Query: 355 AYTI 366
           AYT+
Sbjct: 406 AYTV 409


>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 82  MVHSKREIPAKEGEDADTHTMYFINDG-VYGSFNCVLYDHQIVSAEPLHDRADALLPC-S 255
           +V  + ++P + G   + H M  IN G ++ +F+  ++D Q  +   L  RA+  +   S
Sbjct: 23  IVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQ--NRLLLQQRAEEKITFPS 80

Query: 256 VWGPSC 273
           +W  +C
Sbjct: 81  LWTNTC 86


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 121 EDADTHTMYFINDGVYGSFNCVLYDHQIVSAE 216
           E   T+ + FIN G + +++ ++ DH +   E
Sbjct: 208 EPGKTYRLRFINIGAFNNYDVMIEDHNMTIIE 239


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 109 AKE--GEDADTHTMYFINDGVYGSFNCVLYDHQIV 207
           AKE  G D D  + +      YG  +CVL DH ++
Sbjct: 144 AKEVNGSDVDEKSKHLYPSARYGHLHCVL-DHYLI 177


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
 Frame = +1

Query: 175 FNCVLYDHQIVSA--EPLHDRA---DALLPCSVW 261
           +N  L DH+IVSA  +PL ++    D L   SVW
Sbjct: 335 YNSYLLDHRIVSAFLKPLSEKGNYKDILSLISVW 368


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 97  REIPAKEGEDADTHTMYFINDGVYGSFNCVL 189
           ++IP K+    DT   YF + G+YG ++ +L
Sbjct: 222 KDIPTKDA--LDTVLKYFHSFGMYGDYSYLL 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,439
Number of Sequences: 5004
Number of extensions: 19022
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)