Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0779
(400 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0) 112 1e-25
SB_42275| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=0) 101 3e-22
SB_42350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 27 7.4
SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05) 27 7.4
SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_38136| Best HMM Match : COesterase (HMM E-Value=0) 27 7.4
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)
Length = 635
Score = 112 bits (269), Expect = 1e-25
Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 10/123 (8%)
Frame = +1
Query: 25 RVVAEPGRYFXXXXXXXXXMVHSKREIPAKE--GEDADTHT-------MYFINDGVYGSF 177
R++AEPGRY+ V+S+RE+ + ED MY++NDGVYGSF
Sbjct: 448 RIIAEPGRYYSSSSFTLAVNVYSRREVQSSSVLAEDVTAPENNGNQGFMYYVNDGVYGSF 507
Query: 178 NCVLYDHQIVSAEPLHDRA-DALLPCSVWGPSCDALDCVMESALLPPLDAGDWLVFRDMG 354
NC+++DH V A P+ + + L S+WGP+CD++DC+ ++ +LP ++ G+WL F+ MG
Sbjct: 508 NCLIFDHATVEAIPVKESSGQPLYQTSIWGPTCDSMDCITKNMMLPKVEVGEWLFFKYMG 567
Query: 355 AYT 363
AYT
Sbjct: 568 AYT 570
>SB_42275| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=0)
Length = 210
Score = 101 bits (241), Expect = 3e-22
Identities = 49/124 (39%), Positives = 76/124 (61%), Gaps = 11/124 (8%)
Frame = +1
Query: 28 VVAEPGRYFXXXXXXXXXMVHSKREIPAKEG-----EDA--DTHTMYFINDGVYGSFNCV 186
++AEPGRY+ + +K+ + ++ EDA D MY++NDGVYGSFNC+
Sbjct: 21 IIAEPGRYYVASAFTLAVNIIAKKVMVNEQSGSDDEEDAANDKTLMYYVNDGVYGSFNCI 80
Query: 187 LYDHQ----IVSAEPLHDRADALLPCSVWGPSCDALDCVMESALLPPLDAGDWLVFRDMG 354
L+DH +++ +P D ++ S+WGP+CD LD ++E LP L GDW++F +MG
Sbjct: 81 LFDHAHVKPVLTKKPKPD--ESFYSSSIWGPTCDGLDRIVERFDLPELQVGDWMLFENMG 138
Query: 355 AYTI 366
AYT+
Sbjct: 139 AYTV 142
>SB_42350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 369 RDGVRSHVPKHEPVPGVQWR-QQRALHDAVQRV 274
+DG +H PK P GV W Q + + V+R+
Sbjct: 338 QDGAPAHTPKSGPRKGVNWNFQHLSKRETVRRI 370
>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 175 FNCVLY---DHQIVSAEPLHDRADALLPCSVWGPSCDALDCVMESALLPPL 318
F CVLY D+ V+ ++ A + P +W P ++ +S+ +PP+
Sbjct: 795 FLCVLYHIADNADVNNMTAYNLAVCVAPSMLWAPKGSSVAATEQSSAVPPV 845
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 26.6 bits (56), Expect = 7.4
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -2
Query: 381 GDDDRDGVRSHVPKHEPVPGV-QWRQQRALHDAVQRVTARAPHRARQQRVRPIV*RLSGH 205
G D + +HVP PVP V ++ L V VT P QR P V RL H
Sbjct: 275 GGDTLTRLLTHVPLERPVPAVTRFTTHLPLERPVPTVTC-LPTHLPLQRPLPAVTRLPTH 333
>SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)
Length = 755
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 124 DADTHTMYFINDGVYGSFNC 183
DADT+T YF+N G G NC
Sbjct: 409 DADTNTTYFLN-GETGKNNC 427
>SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Frame = -2
Query: 321 VQWRQQRALHDAVQRVTARAPHRAR------QQRVRPIV 223
V++ +Q + HD + TAR PH + ++R++P+V
Sbjct: 32 VKYAEQNSRHDLFLKHTARGPHTPKCWFYRAEKRIKPVV 70
>SB_38136| Best HMM Match : COesterase (HMM E-Value=0)
Length = 590
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 345 PKHEPVPGVQWRQQRALHDAVQRVTAR 265
P EPV G+ W Q + A +TA+
Sbjct: 501 PTPEPVAGITWSQYNETYPAYMNITAQ 527
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 284 TASWRARCCRHWTPGTGSCFGTWERTPSRSSSP 382
T WR R P G GT ER P R S+P
Sbjct: 631 TDFWREAKRRFVRPSPGGGGGTAERLPPRQSAP 663
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 217 PLHDRADALLPCSVWGPSCDALDCVMESAL---LPPLDAGD 330
P + D++ SVWG S CV SA + PL GD
Sbjct: 107 PQVSQCDSVSAVSVWGLSTQVTQCVSASACGQRMGPLTKGD 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,706
Number of Sequences: 59808
Number of extensions: 175023
Number of successful extensions: 766
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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