Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0779
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-5|AAB18317.1|  422|Caenorhabditis elegans Hypothetical pr...   109   5e-25
U03059-1|AAA88795.1|  422|Caenorhabditis elegans ornithine decar...   106   7e-24
U97191-5|AAB52428.1|  477|Caenorhabditis elegans Hypothetical pr...    56   1e-08
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    26   8.7  

>U64854-5|AAB18317.1|  422|Caenorhabditis elegans Hypothetical
           protein K11C4.4 protein.
          Length = 422

 Score =  109 bits (263), Expect = 5e-25
 Identities = 52/121 (42%), Positives = 75/121 (61%), Gaps = 6/121 (4%)
 Frame = +1

Query: 22  RRVVAEPGRYFXXXXXXXXXMVHSKREIPA----KEGED-ADTHTMYFINDGVYGSFNCV 186
           +R++AEPGR+F          +    E+PA    K+ +D AD   MY+INDGVYGSFNC+
Sbjct: 270 KRLIAEPGRFFAAGPFSLVANIIHATEVPASKITKDPKDCADHGYMYYINDGVYGSFNCI 329

Query: 187 LYDHQIVSAEPLHDR-ADALLPCSVWGPSCDALDCVMESALLPPLDAGDWLVFRDMGAYT 363
           L+DH      PL D   +     ++WGP+CD+LD V +  L+P ++ G+WL + DMGAYT
Sbjct: 330 LFDHAHPIGSPLFDTDRNEKFMSTIWGPTCDSLDLVEDKKLMPKMNVGEWLYYPDMGAYT 389

Query: 364 I 366
           +
Sbjct: 390 L 390


>U03059-1|AAA88795.1|  422|Caenorhabditis elegans ornithine
           decarboxylase protein.
          Length = 422

 Score =  106 bits (254), Expect = 7e-24
 Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
 Frame = +1

Query: 22  RRVVAEPGRYFXXXXXXXXXMVHSKREIPA----KEGED-ADTHTMYFINDGVYGSFNCV 186
           +R+  EPGR+F          +    E+PA    K+ +D AD   MY+INDGVYGSFNC+
Sbjct: 270 KRLYREPGRFFAAGPFSLVANIIHATEVPASKITKDPKDCADHGYMYYINDGVYGSFNCI 329

Query: 187 LYDHQIVSAEPLHDR-ADALLPCSVWGPSCDALDCVMESALLPPLDAGDWLVFRDMGAYT 363
           L+DH      PL D   +     ++WGP+CD+LD V +  L+P ++ G+WL + DMGAYT
Sbjct: 330 LFDHAHPIGSPLFDTDRNEKFMSTIWGPTCDSLDLVEDKKLMPKMNVGEWLYYPDMGAYT 389

Query: 364 I 366
           +
Sbjct: 390 L 390


>U97191-5|AAB52428.1|  477|Caenorhabditis elegans Hypothetical
           protein F53F10.2a protein.
          Length = 477

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
 Frame = +1

Query: 34  AEPGRYFXXXXXXXXXMVHSKREIPAK--EGEDADTHT--MYFINDGVYGSFNCVLYDHQ 201
           A  GR+           V  KR + AK    +D D     +Y  NDGVYGSF C   D +
Sbjct: 286 ASIGRFLVTNAFTLCTNVIGKRAMDAKFITNDDFDDGVGFVYQTNDGVYGSFGCKQMDIK 345

Query: 202 IVSAEPL---HDRADALLPCSVWGPSCDALDCVMESALLPPLDAGDWLVFRDMGAYTIPI 372
            +  +PL   +D  + L   ++ GP+ D  D          L  G+WLV+  MGA+TIP+
Sbjct: 346 PL-CKPLDVENDSEEQLHFGTILGPTLDGTDVAQRLMKSRQLRVGEWLVWEQMGAFTIPV 404


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 333 PVPGVQWRQQRALHDAVQRVTARAPHRARQQRV 235
           PVPG  W     L    +     A HRAR+QR+
Sbjct: 153 PVPGYDWLFSNKLDSPNECGELEAAHRARRQRL 185


>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
           protein 3 protein.
          Length = 1599

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 106 PAKEGEDADTHTMYFINDGVYGSFNCV-LYDHQIVSAEP 219
           P +  EDAD +    IN+G+Y    C+ LY H +    P
Sbjct: 237 PTQIAEDADMNLSLAINNGMY---MCMPLYSHDVTEGMP 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,000,516
Number of Sequences: 27780
Number of extensions: 121817
Number of successful extensions: 465
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)