Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0779
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   6.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -2

Query: 351 HVPKHEPVPGVQWRQQRALHDAVQRVTARAPHRARQQRVRP 229
           +VP  + V  + WR Q+ +     +V   A  + + + +RP
Sbjct: 597 YVPSLDQVWILNWRNQKDIDVKTVQVIEDAAQKKKHRAIRP 637


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 304 LLPPLDAGDWLVFRDMGAY 360
           LL  +DAGD +     GAY
Sbjct: 164 LLMTVDAGDSMFVHTFGAY 182


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 35  PSPGATSRPPPTRSQP 82
           P PG    PP T+  P
Sbjct: 285 PDPGEVDLPPETQPTP 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,076
Number of Sequences: 438
Number of extensions: 1472
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)