Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0779
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12060.1 68418.m01410 self-incompatibility protein-related co...    28   2.6  
At3g14390.1 68416.m01820 diaminopimelate decarboxylase, putative...    28   2.6  
At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative...    27   3.5  
At3g63520.1 68416.m07155 9-cis-epoxycarotenoid dioxygenase / neo...    27   3.5  
At3g50650.1 68416.m05540 scarecrow-like transcription factor 7 (...    27   4.6  
At1g52950.1 68414.m05988 replication protein-related low similar...    27   4.6  
At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,...    27   6.1  
At2g07630.1 68415.m00881 hypothetical protein                          27   6.1  
At3g54840.1 68416.m06076 Rab GTPase (ARA6) identical to small GT...    26   8.0  

>At5g12060.1 68418.m01410 self-incompatibility protein-related
           contains similarity to S3 self-incompatibility protein
           [Papaver rhoeas] GI:1107841
          Length = 150

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -2

Query: 378 DDDRDGVRSHV 346
           DDDRDGVRSH+
Sbjct: 104 DDDRDGVRSHI 114


>At3g14390.1 68416.m01820 diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative similar to diaminopimelate
           decarboxylase [Arabidopsis thaliana] GI:6562332;
           contains Pfam profiles PF02784: Pyridoxal-dependent
           decarboxylase pyridoxal binding domain, PF00278:
           Pyridoxal-dependent decarboxylase C-terminal sheet
           domain
          Length = 484

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 190 YDH-QIVSAEPLHDRADALLPCSVWGPSCDALDCVMESALLPPLDAGDWLVFRDMGAY 360
           Y H ++VS  P            V GP C++ D + +   LP    G  LV  D GAY
Sbjct: 386 YQHIELVSPPPAEAEVTKF---DVVGPVCESADFLGKDRELPTPPQGAGLVVHDAGAY 440


>At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative similar to diaminopimelate
           decarboxylase [Arabidopsis thaliana] GI:6562332;
           contains Pfam profiles PF02784: Pyridoxal-dependent
           decarboxylase pyridoxal binding domain, PF00278:
           Pyridoxal-dependent decarboxylase C-terminal sheet
           domain
          Length = 489

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 256 VWGPSCDALDCVMESALLPPLDAGDWLVFRDMGAY 360
           V GP C++ D + +   LP    G  LV  D GAY
Sbjct: 411 VVGPVCESADFLGKDRELPTPPQGAGLVVHDAGAY 445


>At3g63520.1 68416.m07155 9-cis-epoxycarotenoid dioxygenase /
           neoxanthin cleavage enzyme / NCED1 / carotenoid cleavage
           dioxygenase 1 (CCD1) identical to putative
           9-cis-epoxy-carotenoid dioxygenase [GI:3096910];
           contains Pfam profile PF03055: Retinal pigment
           epithelial membrane protein
          Length = 538

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 103 IPAKEGEDADTHTMYFINDGVYGSFNCVLYDHQIVSAEPL 222
           +P +  E+ D + ++F++D   G     + D + +SAEP+
Sbjct: 470 VPRETAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPV 509


>At3g50650.1 68416.m05540 scarecrow-like transcription factor 7
           (SCL7) 
          Length = 542

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 8   PNSARGAW*PSPGATSRPPPTRSQP 82
           P ++   W PSP +   PPP   QP
Sbjct: 145 PPASTAIWSPSPPSPQHPPPPPPQP 169


>At1g52950.1 68414.m05988 replication protein-related low similarity
           to replication protein A1 GI:2258469 from (Oryza sativa)
          Length = 566

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 220 LHDRADALLPCSVWGPSCDALDCVMESAL 306
           L D  D  LPCS+WG   D +  V + ++
Sbjct: 166 LRDTDDNRLPCSLWGKFADQIHKVSKESV 194


>At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,
           putative strong similarity to beta-galactosidase
           precursor (EC 3.2.1.23) (Lactase) SP:P49676 from
           [Brassica oleracea]
          Length = 769

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 72  RVGGGREVAPGLGYHAPRAEFG 7
           RV GG  +     YHAP  EFG
Sbjct: 245 RVAGGPYITTSYDYHAPLDEFG 266


>At2g07630.1 68415.m00881 hypothetical protein 
          Length = 458

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 220 LHDRADALLPCSVWGPSCDALDCVMESA 303
           L D+ D  LPC++WG   + +    E+A
Sbjct: 132 LRDQKDERLPCTLWGSFAEQVFTACEAA 159


>At3g54840.1 68416.m06076 Rab GTPase (ARA6) identical to small
           GTPase Ara6 [Arabidopsis thaliana] GI:13160603
          Length = 202

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 85  VHSKREIPAKEG-EDADTHTMYFI 153
           +H KRE+P ++G E A+ + M+FI
Sbjct: 151 LHEKREVPTEDGMELAEKNGMFFI 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,691,359
Number of Sequences: 28952
Number of extensions: 114190
Number of successful extensions: 487
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)