Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0778
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    30   0.37 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    29   0.48 
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    29   0.85 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   4.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.0  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   6.0  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   7.9  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   7.9  

>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 299 VRPTTASSQPWGPPSKSVALKPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGT 472
           + P T +   W  P+K+        +  W +RY      +++KP TS T T S+   T
Sbjct: 450 ISPWTFTDTFWAQPAKTQFRTAFTRSREWRRRYRVAPPAENEKPHTSRTNTASSLSST 507


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -2

Query: 470 FHNKLSQLTYVTSSASCPSYPKIL 399
           + N+LS+L YVTSS S P+Y + L
Sbjct: 691 YKNELSELMYVTSSYSQPAYMEFL 714


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 98  RSCLMPTSNYWRNTEFPPLRFK 163
           R CL+P+  +W+N  +PP+  K
Sbjct: 267 RRCLLPSVTFWQNICYPPIFVK 288


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 353 ALKPSDCTSLWYQRYLK 403
           AL  ++CT +WY R+ K
Sbjct: 228 ALPDTECTQIWYSRFAK 244


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 424 EAEDVTYVNWLSLLWNGAAKATEMYQPS 507
           + +DV   NWLS+   GA   T  Y PS
Sbjct: 790 KVQDVRKFNWLSMCTPGALPLTFSYFPS 817


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +2

Query: 329 WGPPSKSVALKPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGTEPLR 484
           +G P + +    +  +S+    +  F G + +K  +   L  S C G E L+
Sbjct: 58  FGLPKRGILKTSTPLSSIKQPNFQSFEGNESEKETSLQELQSSFCSGIENLQ 109


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 250 VKNPLTGKGIESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSL 384
           + +PL      SW  E     ++ +++  AF+E    A+ L LS+
Sbjct: 200 IPSPLPSSSTSSWADEPSPSSTETSSIKRAFQESWLSALSLPLSV 244


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 187 VLIAHEVLLEPQRRKL 140
           + +A+EVL +PQRRKL
Sbjct: 48  ISLAYEVLSDPQRRKL 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,422
Number of Sequences: 5004
Number of extensions: 52840
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)