Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0778
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865... 31 0.67
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 31 0.88
03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438... 30 1.5
01_06_1452 - 37457529-37458743 30 1.5
02_02_0740 - 13581399-13581416,13581690-13581750,13582878-135829... 29 3.5
11_03_0082 - 9689245-9689952 29 4.7
08_02_1616 + 28260204-28262555 28 6.2
04_04_0330 + 24456200-24456261,24456385-24456520,24457100-244571... 28 8.2
>10_07_0124 -
13085820-13085997,13086235-13086362,13086475-13086550,
13086726-13086803,13086985-13087064,13087411-13087480,
13087730-13087887,13088225-13088315,13088379-13088455,
13088612-13088686,13088798-13089071,13089911-13090041,
13090154-13090323,13090413-13090971,13091077-13091127
Length = 731
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 277 IESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSLVPE-ILKI 405
+ SWYS E YD + E+C + +G + ++ E ++KI
Sbjct: 267 LASWYSAAENYDQPIVVVIDDLEQCSGDVLGELVMMLSEWVIKI 310
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 154 EVQVGLHE-LLGHGSGKLLRQNADGTFNFDKEKVKNPLTGKGIESWYSEGETYDSKF 321
++ VG + L+ HG GK + DG +D E K+ +TG+G+ W S G +Y+ F
Sbjct: 39 DIYVGSFDGLVPHGPGKYMW--TDGAL-YDGEWDKSKMTGRGLIQWPS-GASYEGDF 91
>03_01_0594 -
4385291-4385503,4385647-4385829,4385944-4386117,
4386213-4386373,4386470-4386551,4386626-4386658,
4386755-4387161,4387237-4387381,4387483-4387587,
4387704-4387826,4387908-4388027,4388118-4388237,
4388569-4388775,4388857-4389036,4389151-4389285,
4389382-4389519,4389630-4389728,4389832-4389951,
4390029-4390091
Length = 935
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 274 GIESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSLVPEILKIFGYEG-QEAEDVTYVN 450
G+E+++ E D + L FE+ GL + E LK+FG +E + +
Sbjct: 10 GLENFFDED--VDLENLPLEDVFEQLNTSQSGLSSADAAERLKLFGANRLEEKRENKIIK 67
Query: 451 WLSLLWN 471
+LS +WN
Sbjct: 68 FLSFMWN 74
>01_06_1452 - 37457529-37458743
Length = 404
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +1
Query: 292 SEGETYD--SKFTTLGSAFEECRAEAVGLYLSL-VP--EILKIFGYEGQEAEDVTYV 447
S+G +D S+ T GSA R EAVG+ SL +P E++ + G AE +T V
Sbjct: 136 SQGGVFDVLSRVVTSGSACSTAREEAVGVLASLRIPEQELIGVSTRHGNLAESLTAV 192
>02_02_0740 -
13581399-13581416,13581690-13581750,13582878-13582981,
13583140-13583149,13583244-13583308
Length = 85
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -2
Query: 554 MITKRARACACNQVLVEGWYISVALAAPFHNKLSQLTYVTSSASCPSYPKILSISGTKER 375
M+ A C++ L++ W +S A A N L L + CP +P I +S
Sbjct: 1 MVRATRHADTCSRKLLQ-WGLSGARAGEKFNPLPALPWSLRRCRCPYWPPIARVSTCVVV 59
Query: 374 YSPTASARH 348
A+ RH
Sbjct: 60 SESYATCRH 68
>11_03_0082 - 9689245-9689952
Length = 235
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 103 LSDADKQLLEKYRVSAFEVQVGLHELLGHGSGKLLRQNAD-GTFNFDKEKVKNPLTGKGI 279
L+ D +L+K ++ A EV G H+ + G LLR + + D + G+ +
Sbjct: 116 LAHDDVAVLKKVKIEAREVVEGRHDAVPPYLGALLRDKSSYPQMSSDLVLRSETMAGERL 175
Query: 280 ESWYSEGETYDSKFTTLGSA 339
+ WY D ++ G A
Sbjct: 176 KYWYLIERVCDDQWELKGHA 195
>08_02_1616 + 28260204-28262555
Length = 783
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Frame = -1
Query: 609 GLXLLDGEQAAPXQLQQTHDHETCAGVRLQPSLSGGLVH----FGRLSGSVPQQAEPVNV 442
G LLDG L+ A V +P L +H +GR + + E
Sbjct: 580 GRVLLDGRDLRKFNLRSLR--RAMALVPQEPFLFAATIHDNIAYGREGATEAEVVEAATA 637
Query: 441 CDVFGFLSFVPENFKYLWYQREVQSDG 361
+ F+S +PE + L +R VQ G
Sbjct: 638 ANAHKFISALPEGYGTLVGERGVQLSG 664
>04_04_0330 +
24456200-24456261,24456385-24456520,24457100-24457165,
24457260-24457310,24457399-24457455,24457742-24457827,
24458207-24458216,24458385-24458450,24458744-24458784,
24460050-24460182,24460857-24461045,24461145-24461219,
24462228-24462358,24463155-24463229,24463385-24463562
Length = 451
Score = 27.9 bits (59), Expect = 8.2
Identities = 25/73 (34%), Positives = 33/73 (45%)
Frame = +1
Query: 235 FDKEKVKNPLTGKGIESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSLVPEILKIFGY 414
F KE VK PL G G Y E + + K TLG A L + ++ K+ G
Sbjct: 337 FKKEDVKKPLEGFGALIPYKEQQKHGLK--TLGRAI---------LKQLVTSDLRKLLGV 385
Query: 415 EGQEAEDVTYVNW 453
EGQ V +V+W
Sbjct: 386 EGQPT-FVKHVHW 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,632,156
Number of Sequences: 37544
Number of extensions: 376170
Number of successful extensions: 1177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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