Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0778
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0) 137 1e-43
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24) 31 0.68
SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1) 31 0.90
SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033) 28 6.3
SB_27299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072) 28 6.3
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35) 28 6.3
SB_13392| Best HMM Match : hATC (HMM E-Value=0.16) 28 6.3
SB_3404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_39610| Best HMM Match : WSC (HMM E-Value=0.003) 28 8.4
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006) 28 8.4
SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5) 28 8.4
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06) 28 8.4
>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
Length = 488
Score = 137 bits (331), Expect(2) = 1e-43
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 3/162 (1%)
Frame = +1
Query: 220 DGTFNFDKEKVKNPLTGKGIESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSLVPEIL 399
DG++NFD + V N TG+ I+SWY+EGET+ +KF L S++EECRAE VG+YL L ++L
Sbjct: 225 DGSYNFDHKSVVNTETGEKIQSWYTEGETWSTKFAELSSSYEECRAECVGIYLCLNKDVL 284
Query: 400 KIFGYEGQEAEDVTYVNWLSLLWNGAAKATEMYQPSTKTWLQAHARARFVIMR---XXXX 570
+IFG+EG +D+ YVNWL+++ G E Y P W QAH +AR+VI+R
Sbjct: 285 RIFGHEGAAGDDIVYVNWLNMVRAGLL-GLEFYTPENNKWRQAHMQARYVILRVLLEAGE 343
Query: 571 XXXXXXXXXXXXXXKNLLLTLQXDRLATDXKXIIGDFLVKLQ 696
++L+TL ++++ + IG FL KLQ
Sbjct: 344 QLVQLTRIAGSDGKPDILVTLDRNKISCVGQPAIGAFLRKLQ 385
Score = 57.6 bits (133), Expect(2) = 1e-43
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +1
Query: 1 NIPNYDEIRQNEGFKNVSLGNVIPAAYKEYTIPFLSDAD 117
NIPNYDEIRQ+EGFKNVSLGNV+ A + I FL++ D
Sbjct: 183 NIPNYDEIRQDEGFKNVSLGNVLSAHSADQKITFLTEED 221
>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
Length = 346
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +2
Query: 359 KPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGTEPLRRPKCTNPPLRLGCRRTP 535
KP + L ++ + +F + K P + TGS T P P T PP TP
Sbjct: 268 KPDEDGKLAFRLFDRFMRAQRKTPAATTPPTGSPAATTPPTAAPAATTPPTVAPAATTP 326
>SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1)
Length = 172
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +2
Query: 359 KPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGTEPLRRPKCTNPPLRLGCRRTP 535
KP + L ++ + +F + K P + TG+ T P P T PP TP
Sbjct: 93 KPDEDGQLAFRLFDRFMRAQRKTPAATTPPTGAPAATTPPTAAPAATTPPTAAPAATTP 151
>SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +2
Query: 359 KPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGTEPLRRPKCTNPPLRLGCRRTP 535
KP + L ++ + +F + K P + TG+ T P P T PP TP
Sbjct: 160 KPDEDGQLAFRLFDRFMRAQRKTPAATTPPTGAPAATTPPTAAPAATTPPTAAPAATTP 218
>SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +2
Query: 359 KPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGTEPLRRPKCTNPPLRLGCRRTP 535
KP + L ++ + +F + K P + TG+ T P P T PP TP
Sbjct: 46 KPDEDGQLAFRLFDRFMRAQRKTPAATTPPTGAPAATTPPTAAPAATTPPTAAPAATTP 104
>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1732
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +2
Query: 281 NLGTVKVRPTTASSQPWGPPSKSVALKPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSA 460
N+ V +RP TA + SK P CT R + + P +++T SA
Sbjct: 23 NIPQVIIRPVTAPGKHINKSSKPFTPSPPRCTPSPLPRRPNTTVGFYELPISTYTRPKSA 82
Query: 461 CCGTEPLRRPKC---TNPP 508
C TE K TNPP
Sbjct: 83 ICATENASNSKTTPRTNPP 101
>SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)
Length = 892
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 203 CCDRMPMEHSILTKKKSRTL*LVKV*NLGTVKVRPTTASS 322
C E S K KS+T+ LV N GT++V+ + ASS
Sbjct: 64 CATMSTSERSSSLKSKSKTVTLVLFNNTGTLQVQGSEASS 103
>SB_27299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = +1
Query: 136 YRVSAFEVQVGLHELLGHGS----GKLLRQNADGTFNFDKEKVKNP---LTGKGIESW 288
Y + + + + LLGH G + +N D F F+KE NP LT KG E +
Sbjct: 43 YEMYGYHLALTPFPLLGHNRNFAYGMTMFENDDIEFYFEKENQNNPNEYLTEKGFEKY 100
>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
Length = 2374
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 335 PPSKSVALKPSDCTSLWYQRYLKFSGTKDKKPKTSHTLTGSACCGTEPLR 484
P S +A KP C + ++ ++ +KPKT +L S C T R
Sbjct: 1119 PSSTGLASKPEGCLTNQTEQPVQEMVKDSRKPKTVSSLEASGCAMTSSRR 1168
>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
Length = 1026
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +1
Query: 244 EKVKNPLTGKGI---ESWYSEGETYDSKFTTLGSAFEE 348
+ V P+T GI + WY G YD + GS F++
Sbjct: 301 QAVSIPMTRTGINLFDVWYFTGSRYDGQIAVFGSEFQK 338
>SB_13392| Best HMM Match : hATC (HMM E-Value=0.16)
Length = 215
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 336 GPQGCELAVVGLTFTVPRFYTFTSQRVLDFFFVKIECSIGILSQQ 202
GP+GCEL P F+ F + ++F F S + S Q
Sbjct: 66 GPRGCELVAKAKALASPGFHYFQRKFSVEFRFKAARVSCHVASVQ 110
>SB_3404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 13 YDEIRQNEGFKNVSLGNVIPAAYKEYTIPFLSDADKQLLEKY 138
YDE N+ N G V A +KEYT P + + + L+ +
Sbjct: 213 YDEGESNDDDDNDGSGGVYIAQFKEYTRPMIENLVETRLQHW 254
>SB_39610| Best HMM Match : WSC (HMM E-Value=0.003)
Length = 264
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 244 EKVKNPLTGKGIESWYSEGETYDSKF 321
+K +P+ G G+ Y E E YDS F
Sbjct: 109 QKCNDPMLGSGLIGCYKEREMYDSGF 134
>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
Length = 1103
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 112 ADKQLLEKYRVSAFEVQVGLHELLGHGSGKLLRQNADGTFN-FDKEKVKNPLTGKGIESW 288
AD+ + ++ F + + L+ L + +R TF KE+VK P + +
Sbjct: 412 ADECVNVHHQAQQFMISIILNALTPDNADDAIRTQLSNTFQQMQKERVKRPNIWQHNQKL 471
Query: 289 YSEGETYDSKFTTLGSAFE 345
Y G+ +SK T F+
Sbjct: 472 YFLGDEAESKPHTADDTFD 490
>SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5)
Length = 317
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Frame = +2
Query: 338 PSKSVALKPSDCTSLWYQRYLKFSGTKDKKPK-------TSHTLTGSACCGTEPLRRPKC 496
P+K AL P + +W S KDKK + T H + C G + +R K
Sbjct: 12 PAKPPALPPPSESPVWRTGNALSSAKKDKKRQPEDMQSLTHHEFISNGCAGNQHMRNGK- 70
Query: 497 TNPPLR 514
PP R
Sbjct: 71 -KPPRR 75
>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
Length = 553
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = +1
Query: 181 LGHGSGKLLRQNADGTFNFDKEKVKNPLTGKGIESWYSEGETYDSKFTTLGSAFEECRAE 360
L G GKL + N E P +G S + G+T D +TTL E A
Sbjct: 94 LAQGKGKLKTKRLQSMVNSLGEAELGPYSGGSYTS--AAGKTVDLDYTTLDKLTPEINAG 151
Query: 361 AVGLYLSLVPEILKI 405
V Y ++ I+ +
Sbjct: 152 KVVHYRMMIMMIVTV 166
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,069,609
Number of Sequences: 59808
Number of extensions: 435681
Number of successful extensions: 1269
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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