Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0778
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    27   0.23 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.4  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   8.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   8.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +1

Query: 205 LRQNADGTFNFDKEKVKNPLTGKGIESWYSEGETYDSKFTTLGSAFEECRA--EAVGLYL 378
           L++  D TF+   +   NP   +   + + + E+    F      F   R   +A G+Y 
Sbjct: 214 LQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFKRARMGFHGMRGKRDAAGIYG 273

Query: 379 SLVPEILKIFGYEGQEAEDVTYVN 450
           S    +  IFGY+G      TYVN
Sbjct: 274 SNSSTVGTIFGYQG------TYVN 291


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 273 FTSQRVLDFFFVKIECSIGI 214
           FTS ++ + F++ IECS+ +
Sbjct: 139 FTSGKLKEMFYLIIECSLNL 158


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 1   NIPNYDEIRQNEGFKNVSLGNVIPAAYKEYT 93
           N+P   E  +  G +N+ L N+  + YK+ T
Sbjct: 190 NVPQPIESFEAAGLRNIVLDNIKKSGYKKPT 220


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +1

Query: 10  NYDEIRQNEGFKNVSLGNVIPAAYKEYTIPFLSDADKQLLEKYRVSAFEVQVGLHELLGH 189
           N D+ ++N        G+  PA+    T P L+  ++ LL K           LHE  G 
Sbjct: 6   NMDQEKKNNVENLKGGGSTTPASPTLSTPPTLNLMEQILLAKIEKQNLHESDDLHESDGR 65

Query: 190 GSGK 201
             GK
Sbjct: 66  VGGK 69


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = +2

Query: 377 SLWYQRYLKFSGTKDKKPKTSHTLTGSACCGTEPL 481
           + W +   K  G  D  P T   +  S   G E L
Sbjct: 575 AFWNEFLPKLKGIPDPXPNTCKVIASSVSAGEEGL 609


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = +2

Query: 422 KKPKTSHTLTGSACCGTEPLRRPKCTNPPLRLGCRRTPAHVS 547
           K P   H       C   P + P       R   RRTP + S
Sbjct: 378 KNPAMGHWQMSCVACSPPPRQTPPSRKESGRRRRRRTPRYNS 419


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 133 SPVVACRHQTGTVWCTPCTRRGSRCPETR 47
           S V AC+ QTG         R  + PETR
Sbjct: 39  SVVNACQTQTGVATVDIEAVRNGQWPETR 67


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 380 LWYQRYLKFSGTKDKK 427
           L Y+ Y+K+S T +KK
Sbjct: 62  LEYELYIKYSHTHEKK 77


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 268 GKGIESWYSEGETYDSKFTTLGSAF 342
           G G+ +W   G   DS+   L + F
Sbjct: 479 GNGVYAWIGAGRDSDSRLLDLCTKF 503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,644
Number of Sequences: 438
Number of extensions: 3617
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)