Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0778
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34290.1 68414.m04255 leucine-rich repeat family protein cona...    31   0.97 
At5g48180.1 68418.m05952 kelch repeat-containing protein contain...    30   1.7  
At5g66180.1 68418.m08337 expressed protein                             29   3.0  
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g...    29   3.9  
At3g11560.3 68416.m01412 expressed protein                             28   6.8  
At3g11560.2 68416.m01411 expressed protein                             28   6.8  
At3g11560.1 68416.m01410 expressed protein                             28   6.8  
At5g62230.1 68418.m07814 leucine-rich repeat family protein / pr...    27   9.0  
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea...    27   9.0  
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea...    27   9.0  

>At1g34290.1 68414.m04255 leucine-rich repeat family protein
           conatins leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains similarity to disease resistance
           protein GI:3894383 from [Lycopersicon esculentum]
          Length = 266

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -1

Query: 417 FVPENFKYLWYQREVQSDGFSATLFEGGPQGCELAVVGLTFTV-PRFYTFTSQRVLDFFF 241
           F PE F   W Q     + F     EG   G     + L  T+ P F   TS RV+D   
Sbjct: 45  FDPEEFVTSW-QGNNPCEWFGTNCLEGIIIGISFISLNLIGTISPHFADLTSLRVIDLSH 103

Query: 240 VKIECSI 220
            +++C+I
Sbjct: 104 NRLKCTI 110


>At5g48180.1 68418.m05952 kelch repeat-containing protein contains
           Pfam PF01344: Kelch motif (5 repeats) ;similar to Tip
           elongation aberrant protein 1 (Cell polarity protein
           tea1) (SP:P87061) [Schizosaccharomyces pombe]
          Length = 326

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/98 (18%), Positives = 42/98 (42%)
 Frame = +1

Query: 262 LTGKGIESWYSEGETYDSKFTTLGSAFEECRAEAVGLYLSLVPEILKIFGYEGQEAEDVT 441
           +T KG  +     +  D K+    +A E C+       + +   I  +FG++G E  D+ 
Sbjct: 141 VTAKGRVNTLHAYDVVDQKWVEYPAAGEACKGRGAPGLVVVEGRIWVLFGFDGNELGDIH 200

Query: 442 YVNWLSLLWNGAAKATEMYQPSTKTWLQAHARARFVIM 555
             +  S  W       ++  P+ ++   A +  +++++
Sbjct: 201 CFDLASEQWKAVETTGDV--PAARSVFPAVSYGKYIVI 236


>At5g66180.1 68418.m08337 expressed protein
          Length = 325

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 140 LYFSSSCLSASDRNGMVYSLYAAGITLPRDTFLKPSF 30
           L    S LS  + NG+  S+Y  G ++PR   LKP F
Sbjct: 7   LQLPESFLSFLEANGLDPSIYTHGDSIPRYVRLKPGF 43


>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
            P-glycoprotein GI:4204793 from [Solanum tuberosum]
          Length = 1227

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = -1

Query: 609  GLXLLDGEQAAPXQLQQTHDHETCAGVRLQPSLSGGLVH----FGRLSGSVPQQAEPVNV 442
            G+ ++DG+     +L+    H     V+ +P+L    ++    +G+   S  +  E   +
Sbjct: 1039 GIIMIDGQDIKKLKLKSLRRH--IGLVQQEPALFATTIYENILYGKEGASESEVMEAAKL 1096

Query: 441  CDVFGFLSFVPENFKYLWYQREVQSDG 361
             +   F+S +PE +     +R +Q  G
Sbjct: 1097 ANAHSFISSLPEGYSTKVGERGIQMSG 1123


>At3g11560.3 68416.m01412 expressed protein
          Length = 872

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 320 SQPWGPPSKSVALKPSDCTSLWYQRYLKFS 409
           ++P GPP+  V  +  D  S W Q ++K+S
Sbjct: 469 TKPEGPPNYEVIPQLLDVCSYWLQSFIKYS 498


>At3g11560.2 68416.m01411 expressed protein
          Length = 872

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 320 SQPWGPPSKSVALKPSDCTSLWYQRYLKFS 409
           ++P GPP+  V  +  D  S W Q ++K+S
Sbjct: 469 TKPEGPPNYEVIPQLLDVCSYWLQSFIKYS 498


>At3g11560.1 68416.m01410 expressed protein
          Length = 619

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 320 SQPWGPPSKSVALKPSDCTSLWYQRYLKFS 409
           ++P GPP+  V  +  D  S W Q ++K+S
Sbjct: 469 TKPEGPPNYEVIPQLLDVCSYWLQSFIKYS 498


>At5g62230.1 68418.m07814 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 966

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +2

Query: 503 PPLRLGCRRTPAH-VS*SCVCWSWXGAACSP---SRSXSPGKIXC 625
           PP++   R  PA  V    +C +W G+ C P   SR  S G + C
Sbjct: 543 PPMKNFSRFAPASFVGNPYLCGNWVGSICGPLPKSRVFSRGALIC 587


>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +2

Query: 281 NLGTVKVRPTTASSQPWGPPSKSVALKPSDCTSL------WYQRYLKFSGTKDKK 427
           NL   K   ++A+S P  PP +  ++ P    +       W ++  +F+GT+D+K
Sbjct: 553 NLSASKTEESSAASDPVYPPFEFSSVSPPSIITEGSQGGPWRKKITEFTGTEDEK 607


>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +2

Query: 281 NLGTVKVRPTTASSQPWGPPSKSVALKPSDCTSL------WYQRYLKFSGTKDKK 427
           NL   K   ++A+S P  PP +  ++ P    +       W ++  +F+GT+D+K
Sbjct: 553 NLSASKTEESSAASDPVYPPFEFSSVSPPSIITEGSQGGPWRKKITEFTGTEDEK 607


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,913,192
Number of Sequences: 28952
Number of extensions: 294412
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)