Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0777
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   3.8  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.6  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   8.7  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   8.7  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 344 SDRHLALMAHASKDLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTGGAGEGEQ 523
           +D HL++ + +S       LD  S +   PS +LRD+E+   +  + H  +       +Q
Sbjct: 298 ADLHLSIASASSHKNIFSGLDVFSNVFHGPSTTLRDREHDMRNRSFDHSTLAHYEAVKQQ 357

Query: 524 RL 529
           RL
Sbjct: 358 RL 359


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 158 FVMGRYAMLLLAINTVAAMGFIPHGSIGAKDHL 256
           F+  R  +L+ AI+T   +GFI +GSI   +H+
Sbjct: 348 FLKNRGIVLIAAISTTM-IGFIVYGSIDIMNHI 379


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 690 DSWYSRLKXAVFSNSLMHPWSVYPTG 613
           DSW +R   AVF+N+    +++ PTG
Sbjct: 461 DSWSTRWNPAVFANAGFIVFALDPTG 486


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 292 YGQRLQRRGVQLPRVPGQRPPSRPDGAREQGPGERAARL 408
           +G+RL+R G  L     ++PP    G++  G  ER  R+
Sbjct: 68  HGRRLERGGGVLRVEWAKQPPPSGPGSKRGGRRERGGRV 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,467
Number of Sequences: 5004
Number of extensions: 65629
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)