Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0777
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 33 0.18
06_01_0896 - 6889754-6890236 31 1.3
07_03_0408 - 17798033-17798181,17798349-17798616,17798707-177987... 29 3.9
04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581 29 3.9
03_05_0565 + 25667391-25667696 29 3.9
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793 28 6.9
03_05_1129 - 30595580-30595771,30596119-30597162 28 6.9
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 28 6.9
12_01_0317 + 2417147-2417587,2417622-2418134 28 9.1
07_03_0544 + 19309026-19310105 28 9.1
05_04_0454 + 21383068-21384525 28 9.1
04_04_0323 - 24392043-24393021,24393135-24393544 28 9.1
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 28 9.1
03_05_0483 - 24806984-24808324 28 9.1
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 570 LTPFCPRIATRPTHAPSGTQTRDASASSRTQPXSVAST 683
LTP P + T P H+PS + A+ S TQP S A T
Sbjct: 143 LTP-APSLVTHPPHSPSTPEKTQAATPSATQPPSPAVT 179
>06_01_0896 - 6889754-6890236
Length = 160
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Frame = -1
Query: 636 PWSVYPTGHGLGGLQYAGRT----ASVLTICRLGTTPDGRRRCSPS-----PAPPVTYWW 484
PW P+ L AG + A+V+ + G RRRC P APP+
Sbjct: 32 PWEPLPSTPSSSTLSAAGSSGATAAAVIDLICAGELGSRRRRCCPRRGRLRAAPPLPRSG 91
Query: 483 PHNELCCKYSWSR 445
CC + W R
Sbjct: 92 EEGHRCCLWRWRR 104
>07_03_0408 -
17798033-17798181,17798349-17798616,17798707-17798797,
17800458-17800585,17800760-17800891
Length = 255
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 269 LLREVVERMGKDFNDAASSYLEFPASDRHLAL---MAHASKDLENEQLDYDS 415
L++E+ G D + ++L FP SD + +AH D + E+LDYD+
Sbjct: 165 LVKEICPTCG-DHDPKEDTWLMFPGSDIFARVPFHVAHTVLDKDQERLDYDT 215
>04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581
Length = 250
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 498 QAVLARVSSVSDHRAWSLTDKWSKLTPFCPRIATRP--THAPSGTQTRDASASSRTQPXS 671
+A+L R V+ H LT + + R+++ P + APS + +A P S
Sbjct: 79 RAILCRECDVTVHTTSELTRRHGRFLLTGVRLSSAPMDSPAPSEEEEEEAGEDYSCSPSS 138
Query: 672 VASTSCLSAA 701
VA T+ SA+
Sbjct: 139 VAGTAAGSAS 148
>03_05_0565 + 25667391-25667696
Length = 101
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -2
Query: 614 GMGWAGCNTRAERRQF*PFVG*GPRPMVGDAAHPRQHR 501
G GW G R RR PR + DAAHP +HR
Sbjct: 21 GSGWRGDGGRRPRRH-----DLAPRIFMADAAHPPRHR 53
>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
Length = 783
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 310 RRGVQLPRVPGQRPPSRPDGAREQGP 387
R GVQ P+ PG+R SR + GP
Sbjct: 16 RSGVQSPKNPGKRAASRSGASSSDGP 41
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 549 LTDKWSKLTPFCPRIATRPTHAPSGTQTRDASASSRTQPXSVASTSCLSAACA 707
LT W +L FC A G + R A AS + + AST+ +AA A
Sbjct: 19 LTTSWKQLA-FCNSSRLAAAAAGGGQRARPAGASVEARALAPASTAADAAAAA 70
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -3
Query: 601 RVAIRGQNGVSFDHLSVR 548
++ ++G+N V+FDHLSVR
Sbjct: 44 KLTLKGKNPVTFDHLSVR 61
>12_01_0317 + 2417147-2417587,2417622-2418134
Length = 317
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 612 APSGTQTRDASASSRTQPXSVASTSCLSAACA 707
APS T+TR SA+ + QP +++ T+ A A
Sbjct: 28 APSSTRTRRGSAAVQAQPSTLSVTASYRVALA 59
>07_03_0544 + 19309026-19310105
Length = 359
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +2
Query: 407 YDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTGGAGEGEQRL---RPSGVVPNRQMVKTDA 577
Y L+ G+ P L + + ++ HQ + A GEQ PS ++ +DA
Sbjct: 244 YAPLLSGSIVPGLEELQVKAEATTGDHQQKSSAAAAGEQSWDLPTPSSSNVEASIIASDA 303
Query: 578 VLPAYCNPPNP 610
++ A NP
Sbjct: 304 LMAAAAASMNP 314
>05_04_0454 + 21383068-21384525
Length = 485
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +1
Query: 346 RPPSRPDGAREQGP--GERAAR 405
RPP PDGAR GP ER A+
Sbjct: 106 RPPDDPDGARSPGPSHSERMAK 127
>04_04_0323 - 24392043-24393021,24393135-24393544
Length = 462
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 576 PFCPRIATRP---THAPSGTQT-RDASASSRTQPXSVASTSCLSAA 701
PFC AT+P +PS T T R ASASS + + + S +AA
Sbjct: 228 PFCSVGATKPAASADSPSPTSTSRTASASSSSSSSTATTASSSTAA 273
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 587 RAERRQF*PFVG*GPRPMVGDAAHPRQHRLLRTGGP-TTNCAAST 456
R E++Q P +PM +A PR+ RL G P T AAST
Sbjct: 108 RNEQQQLYPVASSPVKPMASEAGAPRRLRLSFDGAPNTAPPAAST 152
>03_05_0483 - 24806984-24808324
Length = 446
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 610 MPRRVHRPGMHQRVREHSRLQSRVPAV 690
+PRR RPG RV L++RVP V
Sbjct: 8 LPRRQRRPGPELRVPARGLLEARVPWV 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,264,990
Number of Sequences: 37544
Number of extensions: 535548
Number of successful extensions: 2094
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2094
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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