Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0777
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35960| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   3.0  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 29   4.0  
SB_41471| Best HMM Match : Cupin_4 (HMM E-Value=0.31)                  29   5.3  
SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)                   29   5.3  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                29   5.3  
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 29   5.3  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   28   7.0  
SB_59333| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   28   7.0  
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_7054| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  

>SB_35960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 577 RSARVLQPAQPMPRRVHRPGMHQRVREHSRLQSRVPAVSALHVR 708
           R+ R+L P Q    R  R G+H R R H RL S+  AV  L ++
Sbjct: 491 RAVRLLHPQQNAEER--RVGVHWRRRSHHRLHSQPLAVMQLPLK 532


>SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +3

Query: 528 SDHRAWSLTDKWSKLTPFCPRIATRPTHAPSGTQT-----RDASASSRTQPXSVASTSCL 692
           S  + WSL +    ++ F     +R  HAPS T T       +   SRT    + S++C 
Sbjct: 358 SSSQIWSLEEHGVNISTFVDDTHSRACHAPSWTSTTLLNLTHSRVLSRTVEYVMHSSACH 417

Query: 693 SAAC 704
           +A+C
Sbjct: 418 AASC 421


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 611  CPVGYTDQGCISEFENTAXFSREYQLSQRCMCDGXHMFSC 730
            CP+G+TDQ C +  ++ A  +   +    C+ DG + +SC
Sbjct: 2548 CPIGFTDQTCSTNIDDCA--TNPCRNGATCV-DGINKYSC 2584



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 611  CPVGYTDQGCISEFENTAXFSREYQLSQRCMCDGXHMFSC 730
            CP G+TDQ C +  ++ A  +   +    C+ DG + +SC
Sbjct: 2472 CPAGFTDQTCSTNIDDCA--TNPCRNGATCI-DGINKYSC 2508



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 611  CPVGYTDQGCISEFENTAXFSREYQLSQRCMCDGXHMFSC 730
            CP+G+TDQ C +  ++ A  +   +    C+ DG + +SC
Sbjct: 2510 CPIGFTDQICSTNIDDCA--TSPCRNGATCV-DGINKYSC 2546


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 545 VPNRQMVKTDAVLPAYCNPPNPCP 616
           V  R ++   A+LPAYC PP+  P
Sbjct: 101 VCRRGLISEHALLPAYCTPPDTLP 124


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 586 RVLQPAQPMPRRVHRPG-MHQRVREHSRLQSRVPAVSALHVRW 711
           RV  P  P P RV  PG  HQRVR       RVP   A H R+
Sbjct: 400 RVPPPGAPHP-RVPPPGASHQRVRPPGAPHPRVPPPGAPHPRF 441


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
 Frame = -1

Query: 507  APPVTYWWPH-NELCC---KYSWSR 445
            APP T+W PH +ELC    K +WSR
Sbjct: 1234 APPSTHWQPHVDELCAASTKGTWSR 1258


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 497 TGGAGEGEQRLRPSGVVPNRQMVKTDAV-LPAYCNPPNPCPVG 622
           +GG   G Q LRPSG  PN Q        +P    P NP P G
Sbjct: 342 SGGPPPGHQGLRPSG--PNNQGPPGPGPNMPPVSGPSNPAPGG 382


>SB_41471| Best HMM Match : Cupin_4 (HMM E-Value=0.31)
          Length = 406

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 295 GQRLQRRGVQLPRVPGQRPPS 357
           G RL+R+G  +P+ P Q+PPS
Sbjct: 5   GNRLRRKGSIIPQSPPQQPPS 25


>SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)
          Length = 598

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 320 SSYLEFPASDRHLALMAHASKDLENEQLDYD 412
           +S+++FP ++R   L   +S D+  E+ +YD
Sbjct: 364 TSFIDFPVTERKSLLETSSSSDMTKERREYD 394


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 597 TRPTHAPSGTQTRDASAS-SRTQPXSVASTSC 689
           ++PTHAP+G Q      S  ++QP   A+  C
Sbjct: 560 SQPTHAPAGPQQASVGTSMGQSQPAQCATVGC 591


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 581 LPAYCNPPNPC-PVGYTDQGCISEFENTAXFSREY 682
           LP+ C P NPC P G T Q   S +     + + Y
Sbjct: 746 LPSSCTPQNPCSPPGCTPQYSTSGYPQAPGYPQSY 780


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 335 FPASDRHLALMAHASKDLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQY 493
           FPA+D    + AHA K LEN     D +I+ +P+   R    L    +   QY
Sbjct: 259 FPATDSEEEMNAHALKCLENTS-TVDQVIESDPTDP-RSSHSLLRDQIEAFQY 309


>SB_59333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 313 RGVQLPRVPGQRPPSRPDGAREQ 381
           RG  LPR PG + P RP   R+Q
Sbjct: 33  RGQTLPRAPGGQNPLRPPWTRQQ 55


>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 335 FPASDRHLALMAHASKDLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQY 493
           FPA+D    + AHA K LEN     D +I+ +P+   R    L    +   QY
Sbjct: 259 FPATDSEEEMNAHALKCLENTS-TVDQVIESDPTDP-RSSHSLLRDQIEAFQY 309


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 519  SSVSDHRAWSLTDKWSKLTPFCPRIATRPTHAPSGTQT 632
            S + D      T+ W K+    P+ +T P   P GT T
Sbjct: 950  SRIDDDTRRVKTESWPKVVSVVPQESTSPIEVPRGTDT 987


>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1175

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 313 RGVQLPRVPGQRPPSRPDGAREQ 381
           RG  LPR PG + P RP   R+Q
Sbjct: 590 RGQTLPRAPGGQNPLRPPWTRQQ 612


>SB_7054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 329 LEFPASDRHLALMAHASKDLENEQLDYDSLIDGNPSPSLRD 451
           + F  S++ LAL+ +AS+++      YD   DG P PS  D
Sbjct: 1   VSFIPSEKRLALLTNASREVPRSSSSYDDGGDG-PVPSDSD 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,341,753
Number of Sequences: 59808
Number of extensions: 543520
Number of successful extensions: 1727
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)