Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0777
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    31   0.62 
At1g80850.1 68414.m09485 methyladenine glycosylase family protei...    31   1.1  
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    30   1.4  
At3g47850.1 68416.m05216 expressed protein                             30   1.9  
At5g06490.1 68418.m00728 zinc finger (C3HC4-type RING finger) fa...    29   4.4  
At1g24560.1 68414.m03090 expressed protein                             29   4.4  
At3g02440.1 68416.m00231 expressed protein                             28   5.8  
At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic...    28   5.8  
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    28   7.6  

>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
            identical to SP|P34881 DNA (cytosine-5)-methyltransferase
            AthI (EC 2.1.1.37) {Arabidopsis thaliana}
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 641  CIPGLCTRRGMGWAGCNTRAERRQF*PFVG*GPRPM--VGDAAHPRQHRLL 495
            C+P    R   GW G   R + +   P     P+PM  VG   HP QHR+L
Sbjct: 1427 CLPNTAERHN-GWKGLYGRLDWQGNFPTSVTDPQPMGKVGMCFHPEQHRIL 1476


>At1g80850.1 68414.m09485 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 327

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 546 SLTDKWSKLTPFCPRIATRPTHAPSGTQTRDASASSRTQPXSVASTS 686
           + T+K  + +P  P I  R   + + + + DAS+S  + P S+ STS
Sbjct: 49  TFTEKMPQCSPLSPPILRRNGISMTASYSSDASSSCESSPLSMTSTS 95


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +2

Query: 599 PPNPCPVGYTDQGCISEFENTAXFSREYQLSQRCMC 706
           PP  CP  Y+DQ   S F N       Y+    C C
Sbjct: 19  PPRVCPRCYSDQTRFSYFNNNKKSQPRYKCKNCCRC 54


>At3g47850.1 68416.m05216 expressed protein
          Length = 322

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 477 CGATST*QAVLARVSSVSDHRAWSLTDKWSKLT-PFCPRIATRPTHAPSGTQTRDASAS 650
           CGA+S+ ++ L R +++S H     T +WS L  P  P  A   T + SGT    +S S
Sbjct: 246 CGASSSSESPLRRAAALSQHNMVPHTSRWSPLVGPSQPGPAV--TVSASGTNYIASSPS 302


>At5g06490.1 68418.m00728 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 197

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 555 DKWSKLTPFCPRIATRPTHAPSGTQTRDASASSR 656
           D W +L P CP   T P  +P+ T   D    SR
Sbjct: 158 DPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSR 191


>At1g24560.1 68414.m03090 expressed protein
          Length = 678

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = -3

Query: 724 EHMXSIAHAALRQLVLATEXGCVLELADASLVCVPDGAWVGRVAIRGQNGVSFDHLS--V 551
           EH+ ++  +AL + V+  +     EL  A+   + DG    + A   ++G   D  S   
Sbjct: 388 EHIGTLLRSALSKRVIGEQPSQKRELFQAAENGLRDGGTDSKFAKLLKDGKVQDSRSDNT 447

Query: 550 RDHARWSETLLTLASTACYVLVAPQRTVLQVLLVAQA 440
            DH++    + +LAST   ++ A Q  ++++  + +A
Sbjct: 448 HDHSKEDNEIYSLASTLENIVKASQLEIVELQHLLEA 484


>At3g02440.1 68416.m00231 expressed protein
          Length = 373

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 308 NDAASSYLEFPASDRHLALMAHASKDLENEQLDYDSLIDGN----PSPSLRDQEYLQHSS 475
           N ++SS +  P+   H +  + + K  ++E   YD+  D       S SL + + L  SS
Sbjct: 46  NSSSSSAISSPSRYNHSSSSSDSYKTEDSEPSSYDNDYDDTYHDPKSSSLHNNDRLSISS 105

Query: 476 LWGHQYVT 499
             GH  VT
Sbjct: 106 SNGHHQVT 113


>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
           to mRNA cap binding protein [Arabidopsis thaliana]
           GI:15192738; contains Pfam profile PF02854: MIF4G
           domain; identical to cDNA nuclear cap-binding protein
           CBP80 GI:8515770
          Length = 848

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 596 NPPNPCPVGYTDQGCISEFENTAXFSREY 682
           NP   C VG  +Q C+S       F+R+Y
Sbjct: 782 NPKKSCEVGEREQWCLSTLGYLTAFTRQY 810


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 188 LAINTVAAMGFIPHGSIGAKDHLITETLLREVVERMGKDFNDAASSYLE-FPASDRHLAL 364
           + + TVA    +  G +GA  H      + E V+ +G+   D   SY   F  +D +L L
Sbjct: 539 VVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKL 598

Query: 365 MAHASKD 385
            + A  D
Sbjct: 599 RSLAHSD 605


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,704,632
Number of Sequences: 28952
Number of extensions: 370145
Number of successful extensions: 1048
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)