Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0776
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 31 0.13
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 2.7
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 27 3.6
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 4.8
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 26 6.3
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 6.3
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 25 8.4
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 25 8.4
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 8.4
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 8.4
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 25 8.4
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 8.4
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 31.5 bits (68), Expect = 0.13
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +2
Query: 239 KFSLSILSWT*IRVVFVTSHPSAPNTPMSSSWSRLAV---GLKAAPSTHTWWPR--RALG 403
KF +S++S+ R + S+P NTP++ V G S H +WP+ +LG
Sbjct: 193 KFMVSLISFMEKRGTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNFWPKISASLG 252
Query: 404 CPSSEEVVDFLKKYD 448
PS + + ++ Y+
Sbjct: 253 FPSPDAISLLIQYYN 267
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +2
Query: 287 VTSHPSAPNTPMSSSWSRLAVGLKAAPSTHTWWPRRALGCPSSEEVVDFLKKYDFD 454
V + S P SS WS +G+ P + ++ R + V + YDF+
Sbjct: 217 VNASASGAVNPTSSQWSDQRLGVPYGPDSPLYYRRATIASDLRPSVYQHPQLYDFN 272
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 3.6
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Frame = +2
Query: 239 KFSLSILSWT*IRVVFVTSHPSAPNTPMSSSWSRLAVGLKAAPST---HTWWPRRALGCP 409
KFS ++ + V HP T +S L+ L PST H A G
Sbjct: 694 KFSNKVVKDNVVNVTVTVEHPGLIWTVVSFDADVLSWSLPEVPSTVRRHHVREVSAYGLD 753
Query: 410 SSEEVVDFLKK---YDFDGLDLDWEYPGAADRG 499
S + +L+ +DF G+D YP A G
Sbjct: 754 SYSFNMSYLEAPIYFDFVGVDGVGHYPSKASEG 786
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 310 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 408
+HP KF+V VGG+ ++ H K T S
Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 11 TNRNC*KCERYLRRWLSWRVAP 76
T +C +CERY++ +W +AP
Sbjct: 58 TVNHCRECERYMQPPNNWMIAP 79
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 403 MSFIRRGCRLLEEI*LRRFGSRL 471
+S +RRGCR +EEI L+ R+
Sbjct: 492 LSAVRRGCRQIEEIVLKLSPERI 514
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 40 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 210
I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
Query: 211 FIGVTEKSSEVLI 249
G T SE +
Sbjct: 250 HNGETALHSETTV 262
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 40 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 210
I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
Query: 211 FIGVTEKSSEVLI 249
G T SE +
Sbjct: 250 HNGETALHSETTV 262
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 625 LHQPE-ISKRYGSSQLPSSIGSDERPL*LLDEIQEL 521
L PE I + QLPS++ DE+ L L DEI L
Sbjct: 13 LFSPESIEQSLKRCQLPSTLLYDEKGLRLFDEITNL 48
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 78 CGATRQDSQRRKYRSHFQQLR 16
CG TR Q++ R F+QLR
Sbjct: 422 CGKTRSPHQKKPLRVEFRQLR 442
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 40 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 210
I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
Query: 211 FIGVTEKSSEVLI 249
G T SE +
Sbjct: 250 HNGETALHSETTV 262
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 106 RIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLI-YSFIGVTEKSSEVLIIDPELDVDKSG 282
R + F NW + RP Y I + L +L + + EK ++++ + D+
Sbjct: 28 RYIVPFKNWVIGRPDRKEYAIRNGAPKLLLNLFSLENLSMNEKYQVFVVLNSLMSEDQDP 87
Query: 283 FRNF 294
F F
Sbjct: 88 FVQF 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,911
Number of Sequences: 5004
Number of extensions: 62832
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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