Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0776
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 35 0.058
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 33 0.23
01_03_0028 - 11783122-11783381,11783668-11784163 31 0.71
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 31 0.94
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 29 2.9
03_06_0754 - 36025579-36027000 29 3.8
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 29 5.0
11_04_0234 + 15187065-15188241,15188316-15188494 28 6.6
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536... 28 8.7
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 28 8.7
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 35.1 bits (77), Expect = 0.058
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +2
Query: 425 VDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDEFLYFVQELKRAFIRADRGWELTAAVPL 604
V ++ FDGLD+ W +P +A + EF + V E + A RG+ LTA V
Sbjct: 152 VKVARENGFDGLDVAWRFPASA------VEMAEFGFLVAEWRAA---VPRGFLLTATVYF 202
Query: 605 ANFRL---MEGYHVPE--LCQELDAIHVMSYDLRXNWAGFAD 715
+N G P + + LD ++VM++ LR A A+
Sbjct: 203 SNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRPPGAANAN 244
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 33.1 bits (72), Expect = 0.23
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = -2
Query: 714 SAKPAQLXRRSYDITWIASSS*HSSGTWYPSISLKLAS-GTAAVSSHPLSALMNALFNSW 538
S+KP + R + + A+++ S+ + YP+I+L L S AA SSH +L N S
Sbjct: 379 SSKPPLIGGRPFFLPTAAAAAITSTPS-YPTITLDLTSPAAAATSSHAAFSLSNRF--SH 435
Query: 537 TKYKNS--SLSEKEPPRSAAPGY 475
T+Y ++ + S P + PGY
Sbjct: 436 TRYPSTGFTFSGSGPSSAPWPGY 458
>01_03_0028 - 11783122-11783381,11783668-11784163
Length = 251
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 416 EEVVDFLKKYD-FDGLDLDWEYPGAADRGGSFSDKDEFLYFVQELKRAFIR 565
E + F+ K++ DG D DW++P AD F D D + V+ L + R
Sbjct: 182 EAGMHFVGKHNKMDGSDYDWDWPHTADVYYRFFDPDRDVGLVEHLYKVITR 232
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 31.1 bits (67), Expect = 0.94
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 298 SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRM--SFIRRGCRLLEEI*LRRFGSR 468
S RSK + M+ EG SK H+VA K TR + IR GC + E+ LRR S+
Sbjct: 120 SRRSKCNESIIMLRFVCSKEGFSKEKHVVAGKKTRKRPASIREGCNAMLEV-LRRGDSK 177
>01_07_0053 +
40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 621 ISLKLASGTAAVSSHPLSALMNALFNSWTKYKNSSLSEKEPPRSA 487
+SLK A+ ++ L L A+FN+ +KYK SS + R+A
Sbjct: 483 LSLKRANEIIGATTEELDLLYYAMFNACSKYKCSSSYQLSKKRAA 527
>03_06_0754 - 36025579-36027000
Length = 473
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 248 LSILSW-T*IRVVFVTSHPSAPNTPMSSSWSRLAVGLKA 361
++I SW T +R ++S PS P++ SSSW VG+ A
Sbjct: 1 MAIESWLTKVRSAIISSKPS-PSSSSSSSWRSKTVGILA 38
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -2
Query: 633 WYPSISLKLASGTAAVSSHPLSALMNALFNSWTKYKNSSLSEKEPPRSAAPGYS 472
W K T SS PL A N S T ++S PP S++P Y+
Sbjct: 674 WKKRAMTKQTDRTGHPSSDPLIADCNICLKSATSGTLDTISPSSPPPSSSPPYN 727
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Frame = +2
Query: 425 VDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDEFLYFVQELKRAFIRADRGWELTAAVPL 604
++ + FDGLDL W +P + D + + ++ + R+ LTA V
Sbjct: 147 IELARANGFDGLDLAWRFPATQLDMENLGDL-LAEWRAEIMEDSTTRSTEPLLLTATVYF 205
Query: 605 AN--FRLME---GYHVPELCQELDAIHVMSYDLRXN 697
+N F + + Y + ++ LD ++++++ L N
Sbjct: 206 SNHLFGMADTNLNYPIDDMSSSLDWVNIITFSLHKN 241
>11_06_0762 +
27043460-27044319,27052096-27052912,27052992-27053649,
27053698-27053934,27054091-27054161,27054346-27054441
Length = 912
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 637 YMV--SLHQPEISKRYGSSQLPSSIGSDERPL*LLDE 533
YM+ SLH+P +S Y +LP+ + D+ L +D+
Sbjct: 144 YMIDDSLHKPRVSAIYDPPRLPADLSVDQHSLVGIDQ 180
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 313 HPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSF 411
+P ++ A GG GG+ YSH A + +F
Sbjct: 93 YPTSHYLAAAGGAGGGGNPYSHFTAAAAAGSTF 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,542,628
Number of Sequences: 37544
Number of extensions: 484931
Number of successful extensions: 1439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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