Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0775
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    28   1.2  
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    26   4.7  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   8.2  

>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 660 KFEXELIPLGLNITITFFVY 601
           KF+ +LI L  NI +TFFVY
Sbjct: 4   KFQSKLINLQFNIILTFFVY 23


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -1

Query: 630 LNITITFFVYHXXII*SEPKNTIRALYTLNQWAGRFSRTTDNRWVKR 490
           +  TIT   Y   +I +    T    Y  N+   + ++ TDN W  R
Sbjct: 23  MGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCR 69


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 388 REAENPAQWRTIGEAYVYQW 329
           +E ++P +WR++G+A +  W
Sbjct: 662 QELDDPLKWRSLGDAALNAW 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,953
Number of Sequences: 5004
Number of extensions: 38408
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)