Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0775
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0634 - 5511393-5511858,5512581-5512879                           30   1.6  
12_01_0541 + 4251931-4254141                                           28   6.4  

>08_01_0634 - 5511393-5511858,5512581-5512879
          Length = 254

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 448 TPLGSVE**WGCRVAGRNWMREAENPAQWRTIGEAYVYQ 332
           T LG+VE   G  +   +W+  A+ P  WRT+  A +Y+
Sbjct: 17  TKLGAVEVLIGAGLVCHSWLDAAKVPELWRTVDMAVLYR 55


>12_01_0541 + 4251931-4254141
          Length = 736

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 369 AGFSASLIQFLPATLHPHHHSTEPKG 446
           A  S S + F PA LH HHH + P G
Sbjct: 343 AALSLSTL-FSPALLHHHHHHSPPPG 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,939
Number of Sequences: 37544
Number of extensions: 245670
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)