Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0775
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    48   7e-06
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    48   9e-06
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    48   9e-06
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    48   9e-06
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    48   9e-06
U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    32   0.47 

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = -1

Query: 537 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP*ARWSD 424
           WAG  +R TD RW   + +W PR  KR  GRP  RW+D
Sbjct: 125 WAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWND 162


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = -1

Query: 537 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP*ARWSD 424
           WAG  +R  D RW   + EWRP   KR  GRP  RW+D
Sbjct: 814 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 851


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = -1

Query: 537  WAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP*ARWSD 424
            WAG  +R  D RW   + EWRP   KR  GRP  RW+D
Sbjct: 989  WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 1026


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = -1

Query: 537 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP*ARWSD 424
           WAG  +R  D RW   + EWRP   KR  GRP  RW+D
Sbjct: 728 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 765


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = -1

Query: 537 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP*ARWSD 424
           WAG  +R  D RW   + EWRP   KR  GRP  RW+D
Sbjct: 340 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 377


>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 543 NQWAGRFSRTTDNRWVKRVLEWRP---RIGKRSAGRP*ARWSDD 421
           +++AG   R   NRW K   EW P   +  KR+ G    RW+ D
Sbjct: 214 SRFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKD 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,863,328
Number of Sequences: 27780
Number of extensions: 217184
Number of successful extensions: 428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)