Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0774
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...   138   8e-34
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    27   3.8  
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    26   5.0  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  

>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score =  138 bits (334), Expect = 8e-34
 Identities = 71/120 (59%), Positives = 88/120 (73%)
 Frame = +1

Query: 373 DQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTK 552
           D EN+  EH  W+ SD DY Y ELL R F ++R  NP + +G+K+K+ + PP V R G K
Sbjct: 152 DSENM-GEHA-WLKSDRDYYYPELLNRFFTLLRTNNPEL-AGEKRKYTIVPPSVHREG-K 207

Query: 553 KTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRXQQKQIENVLRRYI 732
           KT FAN ++I K +HR   H++ FL AELGTSGSVDG+S+LIIKGR QQKQIENVLRRYI
Sbjct: 208 KTIFANISDISKRMHRSLDHVIQFLFAELGTSGSVDGSSRLIIKGRFQQKQIENVLRRYI 267


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 548 QRKPPLPILRKFVKLCIGRPSICWIFFWRNW 640
           +R P L I   F+K+C  RP I  +F W +W
Sbjct: 211 KRLPNLRIFSNFIKVC--RPLIYMLFMW-HW 238


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 605 ACRCKVLQISVKLAKEVFFVP 543
           AC+ ++L++ V+LAK+  FVP
Sbjct: 20  ACKKELLKLKVELAKQNLFVP 40


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 653 EPLVPNSARRKSNKCLACRCKVLQISVKLAKEVFF 549
           EPL  N   +  NK L C+ K   +  KLA ++ +
Sbjct: 22  EPLEANLFGKLHNKLLICKAKKENLEKKLAYQMMY 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,580
Number of Sequences: 5004
Number of extensions: 44842
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)