Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0774
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1699 - 28807154-28807218,28807324-28807466,28807570-288077... 149 2e-36
03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869... 86 2e-17
08_01_0838 - 8185083-8185910 31 1.3
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 29 3.0
05_06_0033 + 25074301-25074393,25074680-25075203,25076367-250764... 29 3.9
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549... 28 6.9
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 28 9.1
>07_03_1699 -
28807154-28807218,28807324-28807466,28807570-28807715,
28808142-28808242,28808314-28808365,28808483-28808538,
28808616-28808721,28809314-28809358
Length = 237
Score = 149 bits (361), Expect = 2e-36
Identities = 71/131 (54%), Positives = 95/131 (72%), Gaps = 11/131 (8%)
Frame = +1
Query: 373 DQENVEDEHGE-----------WVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIM 519
D + VE+E GE W G+D DY+YDELL RVF+I+RE NP + +G +++ +M
Sbjct: 87 DDQVVEEEEGEGIVLGGAPRYPWEGTDRDYNYDELLGRVFNILRENNPDL-AGDRRRTVM 145
Query: 520 RPPQVVRIGTKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRXQQ 699
RPPQV+R GTKKT F NF ++CKT+HRQ +H++ FLLAE+GTSGS+DG +L+IKGR
Sbjct: 146 RPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIKGRFAP 205
Query: 700 KQIENVLRRYI 732
K E +LRRYI
Sbjct: 206 KNFEAILRRYI 216
>03_02_0903 +
12285874-12285918,12286715-12286820,12286906-12286961,
12287062-12287113,12287182-12287282,12287891-12288287,
12288852-12288937,12289061-12289078
Length = 286
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/84 (50%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
Frame = +1
Query: 355 EDVRGEDQENVEDEHG-----EWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIM 519
+D GED+E G W G+D DY Y+ELL RVF+I+RE NP + +G +++ +M
Sbjct: 87 DDQIGEDEEGEGIVLGGATRYPWEGTDRDYKYEELLGRVFNILRENNPDL-AGDRRRTVM 145
Query: 520 RPPQVVRIGTKKTSFANFTEICKT 591
RPPQV+R GTKKT F NF ++CKT
Sbjct: 146 RPPQVLREGTKKTVFVNFMDLCKT 169
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Frame = +1
Query: 547 TKKTSFANFTEIC---KTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRXQQKQIENV 717
++K ++ TEI +HRQ +H++ FLLAE+GTSGS+DG +L+IKGR K E +
Sbjct: 188 SEKINYHELTEIIVYTSRMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAI 247
Query: 718 LRRYI 732
LRRYI
Sbjct: 248 LRRYI 252
>08_01_0838 - 8185083-8185910
Length = 275
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 40 DLEAALAGEQGESTSMETPADTGDVDAPEDDNLD 141
D A AGE+G S+S + GD + EDD+ D
Sbjct: 84 DSSGASAGERGRSSSHRSDVKLGDAEEEEDDDED 117
>06_03_0697 -
23621808-23622127,23622194-23622932,23623298-23623327,
23624183-23624200,23625176-23625268,23625665-23626123
Length = 552
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 49 AALAGEQGESTSMETPADTGDVDAPEDD 132
A LAG QGES +M P GD D +D+
Sbjct: 8 ARLAGSQGESPAMLHPNGDGDGDGGDDE 35
>05_06_0033 +
25074301-25074393,25074680-25075203,25076367-25076442,
25076549-25076641,25077167-25077253,25077338-25078095,
25078447-25078575,25079145-25079265
Length = 626
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 439 ELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTLH-RQAKHL 615
E+LE E+ + S +KQ F++R P+V+ I K+ N +I + + ++ L
Sbjct: 194 EILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGINGGKINRNIEFKETLFL 253
Query: 616 LDFL 627
DF+
Sbjct: 254 SDFM 257
>11_04_0430 +
17653553-17654285,17654305-17654627,17654795-17654921,
17655123-17655338,17655463-17655494
Length = 476
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 340 ELVTEEDVRGEDQ--ENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKK 504
EL E + +G D+ E VE +W G + D +E+ ERV E+N + V +K
Sbjct: 364 ELKFEVEKKGVDENGEEVEFNLEDWDGDEEDDVLEEVYERVEREEMEENEAGVQQEK 420
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 358 DVRGEDQE--NVEDEHGEWVGSDHDYSYDELLE 450
D+ E+ E ++ E GSD DY DE+LE
Sbjct: 111 DISSEESEGNSINSESDTCTGSDEDYHIDEVLE 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,286,480
Number of Sequences: 37544
Number of extensions: 276215
Number of successful extensions: 986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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