Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0774
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)              31   0.76 
SB_23561| Best HMM Match : Hint (HMM E-Value=3.20057e-42)              29   3.0  
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06)                  28   9.3  
SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037)                   28   9.3  

>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 352 EEDVRGEDQENVEDEHGEWVGSDHDYSYDE 441
           E++  GED+EN EDE  E  G D D   +E
Sbjct: 401 EDEENGEDEENGEDEENEENGEDDDDEEEE 430


>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
          Length = 498

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 40  DLEAALAGEQGESTSMETPADTGDVDAPEDDNLDLDNF 153
           DLE A A  Q  +TS+E P D  ++D  E DNL   +F
Sbjct: 69  DLETAFA-PQFNNTSLEIPEDRPNIDVDEFDNLSRASF 105


>SB_23561| Best HMM Match : Hint (HMM E-Value=3.20057e-42)
          Length = 315

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 562 FANFTEICKTLHRQAKHLLDFLLAELGTSGSVD-GNSQLIIKGRXQQKQIENVLRRYIK 735
           +  ++++   LHR   H++D+L  +L     +   +  L+ KG+   ++ E +    +K
Sbjct: 144 YHGYSDVIGFLHRVDGHVIDYLSIKLANGKHLRVSDKHLVFKGKMDSRRFEEIFASQVK 202


>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 34  GFDLEAALAGEQGESTSMETPADTGDVDAPE 126
           G DL AA    QG    + TP D  DVD+P+
Sbjct: 509 GDDLPAAEQSTQGNVAMVTTPTDDVDVDSPQ 539


>SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06)
          Length = 623

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 55  LAGEQGESTSMETPADTGDVDAPEDDNLDLDNFG 156
           +A ++GES S+E   D        D+  D+DN G
Sbjct: 434 IARDEGESPSLEDAEDANPTPESMDNQADVDNTG 467


>SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037)
          Length = 548

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 340 ELVTEEDVRGEDQENVEDEHG 402
           EL  EEDV+ +D +NV+D  G
Sbjct: 498 ELPEEEDVKSDDTQNVDDSTG 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,761,798
Number of Sequences: 59808
Number of extensions: 321446
Number of successful extensions: 1034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)