Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0774
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-12|CAB00049.1|  250|Caenorhabditis elegans Hypothetical p...   138   4e-33
Z75533-12|CAA99824.1|  250|Caenorhabditis elegans Hypothetical p...   138   4e-33
Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arr...    29   2.7  
AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in ...    28   8.1  
AF016452-4|AAB66015.1|  539|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z75712-12|CAB00049.1|  250|Caenorhabditis elegans Hypothetical
           protein K04G2.1 protein.
          Length = 250

 Score =  138 bits (334), Expect = 4e-33
 Identities = 65/123 (52%), Positives = 91/123 (73%)
 Frame = +1

Query: 367 GEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIG 546
           G   +N+ D  G W     DY+Y+E L  V+ +M++KNP   +G K+KF ++ P+V R G
Sbjct: 71  GIGAQNLIDAKGAWP----DYTYEEALTLVYQVMKDKNPDF-AGDKKKFAIKLPEVARAG 125

Query: 547 TKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRXQQKQIENVLRR 726
           +KKT+F+NF EIC+ + RQ KH+L FLLAELGT+GS+DG++ LI+KGR QQKQ E+VLR+
Sbjct: 126 SKKTAFSNFLEICRLMKRQDKHVLQFLLAELGTTGSIDGSNCLIVKGRWQQKQFESVLRK 185

Query: 727 YIK 735
           YIK
Sbjct: 186 YIK 188


>Z75533-12|CAA99824.1|  250|Caenorhabditis elegans Hypothetical
           protein K04G2.1 protein.
          Length = 250

 Score =  138 bits (334), Expect = 4e-33
 Identities = 65/123 (52%), Positives = 91/123 (73%)
 Frame = +1

Query: 367 GEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIG 546
           G   +N+ D  G W     DY+Y+E L  V+ +M++KNP   +G K+KF ++ P+V R G
Sbjct: 71  GIGAQNLIDAKGAWP----DYTYEEALTLVYQVMKDKNPDF-AGDKKKFAIKLPEVARAG 125

Query: 547 TKKTSFANFTEICKTLHRQAKHLLDFLLAELGTSGSVDGNSQLIIKGRXQQKQIENVLRR 726
           +KKT+F+NF EIC+ + RQ KH+L FLLAELGT+GS+DG++ LI+KGR QQKQ E+VLR+
Sbjct: 126 SKKTAFSNFLEICRLMKRQDKHVLQFLLAELGTTGSIDGSNCLIVKGRWQQKQFESVLRK 185

Query: 727 YIK 735
           YIK
Sbjct: 186 YIK 188


>Z19155-3|CAA79558.2|  812|Caenorhabditis elegans Hypothetical
           protein F54G8.2 protein.
          Length = 812

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = +1

Query: 436 DELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTSFANFTEICKTLHRQAKHL 615
           D  +   F +MREK P   + + +  +        +GT +T     +  CK LH Q   L
Sbjct: 588 DASIAHRFHVMREKFPEKFNSRMRNKLW----YFELGTSET----LSSSCKNLHEQIDIL 639

Query: 616 LDFLLAELGTSGSVDGNSQLII 681
            D    +LG   S++G + L I
Sbjct: 640 CDGESIDLGQDASLEGIALLNI 661


>AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arrest
           at two-fold protein6 protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 388 EDEHGEWVGSDHDYSYDELLERVFDIMREKNPSMVSGKKQKFIMRPPQVVRIGTKKTS 561
           EDEHG   G+ H    DE+LE   +     + S+V    +   +   ++ R  TK+T+
Sbjct: 36  EDEHGNQGGAHHATDEDEVLELELEGREALDQSLVPVLARNIWLEEGEIRRYLTKETA 93


>AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform b protein.
          Length = 871

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 343 LVTEEDVRGEDQENVE-DEHGEWVGSDHDYSYDELLER 453
           LV++E   G+ +E  E DE G+     +DY Y++  ER
Sbjct: 96  LVSDESTTGDHEEEEEDDEDGDDESDHNDYDYEDDGER 133


>AF016452-4|AAB66015.1|  539|Caenorhabditis elegans Hypothetical
           protein T05H4.9 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 370 EDQENVEDEHGEWVGSDHDYSYDELLERVFDIM 468
           ED + V+D H +W+  + + S D +L    D+M
Sbjct: 53  EDDDAVDDNHEDWIPEEFEPSDDVVLASHRDVM 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,397,295
Number of Sequences: 27780
Number of extensions: 253220
Number of successful extensions: 946
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)