Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0774
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    30   0.027
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   1.0  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 445 LERVFDIMREKNPSMVSGKKQKFIMRPP 528
           L+++FDI  ++N  ++SG+ QK    PP
Sbjct: 358 LDKIFDIATKENAMLLSGRSQKSTTGPP 385


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +1

Query: 361 VRGEDQENVEDEHGEWVGSDHDYSYDELLERVFDIMRE--KNPSMVSGKKQKFIMRPPQV 534
           ++ + ++N E++  + V  + + +YDE       I+R   K+P    G +     R   +
Sbjct: 155 MKSKKEQNAEEDIVDPV--EENETYDEFDTIRIPIVRSLSKSPPNDEGIETDSDRRKGSI 212

Query: 535 VRIGTKKTSFANFTEICKTLHRQAKHLL 618
            R  +  ++ A+  +I  T H+Q +H L
Sbjct: 213 ARCWSLDSTAASDEDISLTTHQQKRHKL 240


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 668 LFPSTEPLVPNSARRKSNKCLACRCKVLQIS 576
           L  S EPL+P   RR +   L+ + K L I+
Sbjct: 47  LMDSNEPLLPLRHRRVTCDVLSWQSKWLSIN 77


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 358 DVRGEDQENVEDEHG 402
           D R +D+EN E+E G
Sbjct: 278 DDRDDDEENEEEEDG 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,364
Number of Sequences: 438
Number of extensions: 3031
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)