Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0773
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...   213   2e-56
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    33   0.030
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    29   0.85 
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    27   3.4  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   6.0  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   7.9  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   7.9  

>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score =  213 bits (520), Expect = 2e-56
 Identities = 108/188 (57%), Positives = 131/188 (69%), Gaps = 1/188 (0%)
 Frame = +3

Query: 87  TVDTKPYEGQKPGTSGLRKKVKVFIQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLV 266
           T+ TKPYEGQ+PGTSGLRKKV VF Q NY ENF+Q  +DV + S  G+ LVVGGDGRY  
Sbjct: 4   TIPTKPYEGQRPGTSGLRKKVTVFEQPNYVENFVQATMDVVEPSAKGAHLVVGGDGRYFN 63

Query: 267 KEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGADEDF 446
              +  I  I+A NGV K+IVG NG LSTPA S+IIRKYK  GGI+LTASHN GG   DF
Sbjct: 64  FHAIQVIAAIAAGNGVEKIIVGTNGYLSTPAASHIIRKYKLTGGIILTASHNAGGPKNDF 123

Query: 447 GIKFNCSNGGPASDATTDAIYKLTTSIKQYKIVPDLNCAIDKIDVHTFKVDQ-RQFTVEV 623
           GIK+N  NGGPA ++ T+ IY +T +I +YK+V      I  +D+ T  V +    TVEV
Sbjct: 124 GIKYNLGNGGPAPESVTEKIYSITKTISEYKMV-----KIPPLDLTTTGVRRYGPLTVEV 178

Query: 624 IDAVEDYV 647
           ID V+DYV
Sbjct: 179 IDPVKDYV 186


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
 Frame = +3

Query: 123 GTSGLRKKVKV-FIQENY------TENFIQCILD-VNKTSLIGSTLVVGGDGRYLVKEVV 278
           GTSGLR ++   F + N       ++ F + +L  V   + +G  +V+G D R+      
Sbjct: 48  GTSGLRAEIGAGFARMNCLTVIQASQGFAEYLLQTVPSAAKLG--VVIGHDHRHKSNTFA 105

Query: 279 DKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGADEDFGIKF 458
                +    G          ++ TP V + ++   T  G+++TASHNP   +   G K 
Sbjct: 106 RLTAAVFLQKGFKTYFFDH--LVHTPLVPFAVKTLGTAAGVMITASHNPAAYN---GYKV 160

Query: 459 NCSNG 473
              NG
Sbjct: 161 YWGNG 165


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 378 KYKTLGGIVLTASHNPGGADEDFGIKFNCSNGG 476
           K KT+G +++TASHNP    ED G+K   ++GG
Sbjct: 40  KGKTIG-VMITASHNP---VEDNGVKIIDADGG 68


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = +3

Query: 270 EVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGADEDFG 449
           +  D  I     NG   + +G  G+        ++R+Y +LG   +T +HN    D  F 
Sbjct: 122 DCADDAIAAFRNNGKIAIALGVEGLHQVDTSLAVLRQYYSLGVRYITLTHN---CDNPFA 178

Query: 450 IKFNCSNGG 476
              +   GG
Sbjct: 179 TAASSITGG 187


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 185 KILRVVFLNENFNFFTQSTCARLLALIRFSVNRYTVRH 72
           K+L +VFL+  F  + QS C RL ++    + R    H
Sbjct: 104 KLLFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCREH 141


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 270 LSRDTFRLLRQPGSILSKR 214
           +SR+T RL+ +PGS++S R
Sbjct: 546 VSRETPRLMARPGSLVSNR 564


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 366 YIIRKYKTLGGIVLTASHNPGGADED-FGIKFNCSNGGPASDATTDAI 506
           Y+I+KY+ L  IV+  S+      E+   I  +  +  P+  AT DA+
Sbjct: 129 YVIKKYQNLKNIVVRLSNGTEACKEEAVLINAHVDSTLPSPGATDDAL 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,090
Number of Sequences: 5004
Number of extensions: 59297
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)