Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0773
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117... 186 1e-47
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581... 163 9e-41
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 29 3.5
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 29 3.5
02_04_0192 + 20795659-20796309 29 3.5
03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484 29 4.7
12_02_0473 + 19474784-19474792,19475707-19476519,19476892-194769... 28 6.2
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 28 8.2
04_04_0236 + 23825368-23825763,23826229-23828667 28 8.2
01_06_0531 + 30041486-30041770,30042029-30042964 28 8.2
>03_05_0898 +
28610123-28610203,28611190-28611271,28611666-28611721,
28612253-28612366,28612484-28612546,28612633-28612752,
28612850-28612950,28613097-28613156,28613243-28613342,
28613421-28613575,28613661-28613756,28614269-28614403,
28614510-28614573,28614648-28614729,28615038-28615213,
28615302-28615378,28615637-28615769,28615939-28616055,
28616394-28616398,28616564-28616684,28616711-28617751
Length = 992
Score = 186 bits (453), Expect = 1e-47
Identities = 95/192 (49%), Positives = 126/192 (65%), Gaps = 8/192 (4%)
Frame = +3
Query: 96 TKPYEGQKPGTSGLRKKVKVFIQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRYLVKE 272
T P++GQKPGTSGLRKKV VF Q +Y +NF+Q + + G+T+VV GDGRY K+
Sbjct: 11 TTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPADKVKGATIVVSGDGRYFSKD 70
Query: 273 VVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKY------KTLGGIVLTASHNPGGA 434
V I K++AANGV ++ VGQN ++STPAVS +IR+ K G +LTASHNPGG
Sbjct: 71 AVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGP 130
Query: 435 DEDFGIKFNCSNGGPASDATTDAIYKLTTSIKQYKIVPDL-NCAIDKIDVHTFKVDQRQF 611
EDFGIK+N NGGPA ++ TD I+ TT+I +Y I DL + I + V TF + F
Sbjct: 131 TEDFGIKYNMENGGPAPESVTDKIFSNTTTITEYLIAEDLPDVDISVVGVTTFSGPEGPF 190
Query: 612 TVEVIDAVEDYV 647
V+V D+ DY+
Sbjct: 191 DVDVFDSTIDYI 202
>10_02_0145 -
5817684-5817751,5817850-5817955,5818145-5818222,
5818334-5818380,5818476-5818557,5818688-5818829,
5819027-5819142,5819244-5819318,5819413-5819531,
5820569-5820636,5820739-5820803,5820887-5820968,
5821462-5821514,5821589-5821711,5821986-5822054,
5822581-5822649,5822735-5822786,5823423-5823475,
5823562-5823654,5823762-5823806,5824616-5824777
Length = 588
Score = 163 bits (397), Expect = 9e-41
Identities = 88/175 (50%), Positives = 116/175 (66%), Gaps = 3/175 (1%)
Frame = +3
Query: 144 KVKVFIQENYTENFIQCILD-VNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSK 320
KVKVF QENY N+IQ + + + +G TLV+GGDGRY K+ I KI+A NGV K
Sbjct: 54 KVKVFQQENYLANWIQALFNSLPPEDYVGGTLVLGGDGRYFNKDAAQIITKIAAGNGVGK 113
Query: 321 LIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGADEDFGIKFNCSNGGPASDATTD 500
++VG+NG+LSTPAVS +IRK + GG +++ASHNPGG D D+GIKFN S+G PA + TD
Sbjct: 114 ILVGRNGLLSTPAVSAVIRKRQANGGFIMSASHNPGGPDNDWGIKFNYSSGQPAPETITD 173
Query: 501 AIYKLTTSIKQYKI--VPDLNCAIDKIDVHTFKVDQRQFTVEVIDAVEDYVFVHE 659
IY T SI + K +PD++ + + V V FTVEVID V DY+ + E
Sbjct: 174 QIYGNTLSISEIKTADIPDVD--LSSLGV----VSYGDFTVEVIDPVLDYLELME 222
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 276 VDKIIKISAANGVSKLIVGQNGILSTPAVSYIIR 377
+D+++K + GV L + NG+ ST A SY+ R
Sbjct: 105 IDRVMKKHSGIGVKALTIEFNGLFSTKARSYLER 138
>03_02_0859 - 11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 133 PLVPGFWPSYGLVSTVTLLDMILVIK*VSSKGHELFKRISRH 8
P++PGFW Y ++ T ++L + V H + K I H
Sbjct: 1049 PILPGFWAIYKVMGTGLFWALLLAVIVVGMIPHFVAKAIREH 1090
>02_04_0192 + 20795659-20796309
Length = 216
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = -1
Query: 451 MPKSSSAPPGLWDAVRTIPPRVLYFLMI*DTAGV--ESIPFCPT-INFETPFAALILIIL 281
MP SSS PP A P R ++ +AG S F T + +PF + +
Sbjct: 1 MPSSSSPPPPPPPATTATPRRRRRRRLLPSSAGGGGSSSSFSSTNSSSSSPFVSFLPPPT 60
Query: 280 STTSFTRYLPSP 245
S + F R+LPSP
Sbjct: 61 SPSPFHRFLPSP 72
>03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484
Length = 355
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 312 VSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGADEDFGI 452
V KL Q + S V I K + G+V+ H P DED G+
Sbjct: 157 VQKLSTKQPSLESRQMVLQEIAAEKGIAGVVVHVVHEPSSHDEDSGL 203
>12_02_0473 +
19474784-19474792,19475707-19476519,19476892-19476963,
19478379-19478594
Length = 369
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 393 GGIVLTASHNPGGADEDFGIKFNC--SNGGPASDATTDAIYKLTTSIKQYKIVP 548
GG+ + + P DE + + NGG D TT LTT + ++ +P
Sbjct: 10 GGVGIGLASPPPSVDEPVSFQESSVSRNGGKIEDGTTKETVSLTTDVPEFPELP 63
>06_03_1508 - 30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = -3
Query: 605 PLIYLKSMYVDFVNGAV*IWDNLVLLYRGGEFVDGIGGSIGSRAPVTAVELYAEVLVRTA 426
P++YL SM+ F N IW+N V+L V GIG + + +L++ +L
Sbjct: 881 PIVYL-SMFYFFNNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGSAQLWSALLPVVL 939
Query: 425 RIVGRRENYT 396
++ ++ T
Sbjct: 940 TLIATQQKDT 949
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 161 SRKLHGEFYSMHFGCEQNLFDRIDPGCRRRRKVSRERGC 277
S + G Y F C + RI PG + RR++ + GC
Sbjct: 213 SHSVDGVKYRATFVCYKGGIARIKPGLKARRRLVAKTGC 251
>01_06_0531 + 30041486-30041770,30042029-30042964
Length = 406
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +3
Query: 489 ATTDAIYKLTT-SIKQYKIVPDLNCAIDKID 578
A +D Y+LTT +IK+Y+ +PD A++ ++
Sbjct: 8 AVSDIAYRLTTFAIKKYQQLPDAEVALETLN 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,892,805
Number of Sequences: 37544
Number of extensions: 396396
Number of successful extensions: 1109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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