Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0773
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7015| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_5477| Best HMM Match : M20_dimer (HMM E-Value=0.096) 34 0.13
SB_45229| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 4.8
SB_9147| Best HMM Match : Sushi (HMM E-Value=0) 28 6.3
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 28 8.4
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32) 28 8.4
SB_7324| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_1061| Best HMM Match : Extensin_2 (HMM E-Value=2) 28 8.4
>SB_7015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 525 IKQYKIVPDLNCAIDKIDVHTFKVDQRQFTVEVIDAVEDYV 647
+ QYKI D+ + + ++ +D R FTV + D+V+DYV
Sbjct: 1 MSQYKICTDITADLTALGTQSWDIDGRNFTVNIRDSVDDYV 41
>SB_5477| Best HMM Match : M20_dimer (HMM E-Value=0.096)
Length = 543
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 243 GGDGRYLVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYI 371
G +YLVK V D++IK+ NGV ++ N + S P S++
Sbjct: 486 GQRSQYLVKLVTDRVIKMKPVNGVLHDVLTSNRVNSPPNHSFV 528
>SB_45229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 258 YLVKEVVDKIIKISAAN-GVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGA 434
YL E D ++++ + +L G GIL + + IR Y+T+ V++ P
Sbjct: 10 YLASEYGDLVVRLEGRHEDGQRLPAGGEGILGRDTMGHFIRNYQTMDAYVISQIPQPMEK 69
Query: 435 DEDF 446
D F
Sbjct: 70 DVSF 73
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +3
Query: 60 ITRIMSNSVTVDTKPYEGQKPGTS---GLRKKVKVFIQENYTENFIQCILDVNKTSLIGS 230
+ R + ++++++ EG+K + GL KK K+ NY ++ D N LI
Sbjct: 1095 LVRSRESIMSLESQVVEGRKINETLNKGLEKKEKIIDDLNYQIKMLRKNFDANNQELI-- 1152
Query: 231 TLVVGGDGRYLVKEVVDKIIKISAANG 311
+ V DG K+ ++K +++AA G
Sbjct: 1153 SYKVRTDGLEAEKKEIEK--RLAAAQG 1177
>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1656
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 536 VLLYRGGEFVDGIGGSIGSRAPVTAVELYAEVLVRTARIVGR 411
V +YR E + IG ++ RA Y+E LVR A + R
Sbjct: 1487 VRIYRHQEIKEFIGSTVCLRAEFYGCSFYSECLVRGASVFAR 1528
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +3
Query: 315 SKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGADEDFGIKFNCSNGGPASDAT 494
S L+ QN TP + ++ V+ N ++ G+ FNC + G ++A
Sbjct: 930 SLLVTNQN----TPVATTLVTSEPFTTKCVIDGCMNGASPNKYNGLCFNCYHRGLDNEAE 985
Query: 495 TDAIYKLTTSIKQYKIVP 548
+AI + T + Y+ P
Sbjct: 986 WNAIRQKNTQLPHYQSPP 1003
>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
Length = 318
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 168 NYTENFIQCI-LDVNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVS 317
N+T+ FI+ L NKT++ G +L E DK ++A NG++
Sbjct: 163 NFTKKFIEPFTLSENKTNVAAGVFADVGKLEFLFTENYDKPSLLAALNGIA 213
>SB_7324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -3
Query: 530 LYRGGEFVDGIGGSIGSRAPVTAVEL 453
LY G EF+ GGS SRA TAVEL
Sbjct: 58 LYLGIEFLQP-GGSASSRAAATAVEL 82
>SB_1061| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 352
Score = 27.9 bits (59), Expect = 8.4
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Frame = +3
Query: 309 GVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGADEDFGI--KFNCSNGGPA 482
G+S L +LSTPA I+ LG +A P + I + ++ P+
Sbjct: 135 GISNLPPAVEALLSTPAAELSIKPQVNLGNNCASAI-IPSNCTANTVIPGNYTANDAIPS 193
Query: 483 SDATTDAI---YKLTTSIKQ----YKIVPDLNCAIDKIDVHTFKVDQRQFTVE 620
++ T DAI Y I + Y ++P N A + I +T ++ TV+
Sbjct: 194 NNTTNDAIPGKYTANDVIPRNNTAYDVIPSNNNANEVIPSNTLQMTSSLATVD 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,779,909
Number of Sequences: 59808
Number of extensions: 470034
Number of successful extensions: 1698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1695
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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