Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0773
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.           27   0.57 
AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.     27   0.57 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   0.57 
AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione S-tran...    26   0.99 
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   1.7  
AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein prot...    24   4.0  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    23   7.0  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   7.0  

>AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.
          Length = 259

 Score = 27.1 bits (57), Expect = 0.57
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 9   CRDIRLNNSCPLLDTYLITRIMSNSVTVDTKPYEGQKP 122
           C+D   N +CP+L T++  R  +      T  Y   KP
Sbjct: 174 CKDEAGNVTCPVLQTFVCMRCKATGTKAHTAKYCPLKP 211


>AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 0.57
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 9   CRDIRLNNSCPLLDTYLITRIMSNSVTVDTKPYEGQKP 122
           C+D   N +CP+L T++  R  +      T  Y   KP
Sbjct: 175 CKDEAGNVTCPVLQTFVCMRCKATGTKAHTAKYCPLKP 212


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.1 bits (57), Expect = 0.57
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
 Frame = +3

Query: 42  LLDTYLITRIMSNSVTVDTKPYEG--QKPGTSGLRKKVKVFIQENYTENFIQCILDVNKT 215
           +LD+      +SN V V     +    K G +G+ K     I +N   N  QC +     
Sbjct: 41  ILDSICFVLGISNLVHVRATSLQDLVYKSGQAGITKATVTLIFDNSNPN--QCPIGYETC 98

Query: 216 SLIGST--LVVGGDGRYLV--KEVVDKIIK 293
             I  T  +VVGG  +YL+  K V +K ++
Sbjct: 99  REISITRQIVVGGKNKYLINGKSVQNKRVQ 128


>AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione
           S-transferase u2 protein.
          Length = 222

 Score = 26.2 bits (55), Expect = 0.99
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 542 NLVLLYRGGEFVDGIGGSIGSRAPVTAVELYAEVLVRTARIVGRRENYTTKSFIFSND 369
           N VL +  G F     G+IG+     A E+  E+   T + +   E+Y T++  F+ +
Sbjct: 97  NRVLHHDLGSFYPKFFGTIGALFSGAATEISDEMKTTTQKALTDLEHYLTRNDYFAGE 154


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 237 VVGGDGRYLVKEVVDKIIKISAANGVSK 320
           V  GDG+Y+V EV+    K S A G+ K
Sbjct: 520 VEDGDGQYVVLEVIQLQDKDSKAAGMEK 547


>AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein
           protein.
          Length = 385

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 638 FHCIYDFDCKLPL--IYLKSMYVDFVNGA 558
           FH +Y+ D K PL    +K++Y   ++GA
Sbjct: 212 FHVVYEADGKTPLNESDVKALYTTMLDGA 240


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 106 MRAKSRAQVDCVKKLK 153
           +RAKSRAQ+  VK LK
Sbjct: 602 LRAKSRAQIAKVKLLK 617


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +3

Query: 327 VGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGADEDFGIKFNCSNGGPASDATTDA 503
           V  N I    A S  ++  K+  G +  ASH PGG +     K       P  +A  DA
Sbjct: 644 VPMNKIQVGGAPSPNLKVVKSKIGSLENASHKPGGGNVKIETKKIDIKAAPRIEAKNDA 702


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,870
Number of Sequences: 2352
Number of extensions: 15880
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)