Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0773
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.17 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    27   0.23 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 425 GRCGRGLRHKVQLQ*RGPGFRCYHRCHLQTHHLDKAVQ 538
           G C   L+HK+++    P + C  RC+     +++ VQ
Sbjct: 453 GLCPYTLKHKIRVPPGTPIYECNKRCNCDIDCINRVVQ 490


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 483 SDATTDAIYKLTTSIKQYKIVPDLNCAIDKIDV 581
           ++A  DA+  L   +K +KI+P    A+D + +
Sbjct: 45  AEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKI 77


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 314 NPIRCTDLNNFINNLFHEI-PSVSSDNQG 231
           +PI C D N + N L ++I P    D+ G
Sbjct: 17  SPIDCVDANWYKNALVYQIYPRSFQDSDG 45


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +3

Query: 261 LVKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYI 371
           L+  +V   + I   N  +K I+G +   +TP + ++
Sbjct: 2   LLYHIVGASVLICLLNETAKAIIGVDECQATPVIHFL 38


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 477 PASDATTDAIYKLTTSIKQYKIVPDLNCAIDKIDVHTFKVD-QRQFTVEVIDAV 635
           P  DAT D +         YK+  +L    DK+     ++D ++Q T  ++ +V
Sbjct: 334 PLHDATRDLVLMSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTDRLLYSV 387


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 477 PASDATTDAIYKLTTSIKQYKIVPDLNCAIDKIDVHTFKVD-QRQFTVEVIDAV 635
           P  DAT D +         YK+  +L    DK+     ++D ++Q T  ++ +V
Sbjct: 334 PLHDATRDLVLMSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTDRLLYSV 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,953
Number of Sequences: 438
Number of extensions: 4139
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)