Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0773
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putati... 202 2e-52
At1g70730.1 68414.m08153 phosphoglucomutase, cytoplasmic, putati... 201 4e-52
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 186 9e-48
At5g17530.2 68418.m02057 phosphoglucosamine mutase family protei... 35 0.060
At5g17530.1 68418.m02056 phosphoglucosamine mutase family protei... 35 0.060
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 30 1.3
At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH, chlor... 29 2.2
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 29 3.9
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi... 27 9.0
>At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putative
/ glucose phosphomutase, putative strong similarity to
SP|P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)
(Glucose phosphomutase 2) (PGM 2) {Zea mays}; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 583
Score = 202 bits (493), Expect = 2e-52
Identities = 105/195 (53%), Positives = 132/195 (67%), Gaps = 8/195 (4%)
Frame = +3
Query: 87 TVDTKPYEGQKPGTSGLRKKVKVFIQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRYL 263
TV T P +GQKPGTSGLRKKVKVF Q NY ENF+Q + + G+TLVV GDGRY
Sbjct: 7 TVSTSPIDGQKPGTSGLRKKVKVFKQPNYLENFVQATFNALTAEKVKGATLVVSGDGRYY 66
Query: 264 VKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKY------KTLGGIVLTASHNP 425
K+ V IIK++AANGV ++ VG+N +LSTPAVS +IR+ K G +LTASHNP
Sbjct: 67 SKDAVQIIIKMAAANGVRRVWVGKNTLLSTPAVSAVIRERSGADGSKATGAFILTASHNP 126
Query: 426 GGADEDFGIKFNCSNGGPASDATTDAIYKLTTSIKQYKIVPDL-NCAIDKIDVHTFKVDQ 602
GG EDFGIK+N NGGPA ++ TD IY+ T +IK+Y I DL N I + V +F+ +
Sbjct: 127 GGPTEDFGIKYNMENGGPAPESITDKIYENTKTIKEYPIAQDLPNVDISAVGVTSFEGPE 186
Query: 603 RQFTVEVIDAVEDYV 647
+F VEV D +DYV
Sbjct: 187 GKFDVEVFDPADDYV 201
>At1g70730.1 68414.m08153 phosphoglucomutase, cytoplasmic, putative
/ glucose phosphomutase, putative strong similarity to
SP|P93804 Phosphoglucomutase, cytoplasmic 1 (EC 5.4.2.2)
(Glucose phosphomutase 1) (PGM 1) {Zea mays}; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 585
Score = 201 bits (490), Expect = 4e-52
Identities = 103/194 (53%), Positives = 132/194 (68%), Gaps = 8/194 (4%)
Frame = +3
Query: 90 VDTKPYEGQKPGTSGLRKKVKVFIQENYTENFIQCILDVNKTSLI-GSTLVVGGDGRYLV 266
V T P +GQKPGTSGLRKKVKVF Q NY ENF+Q + T + G+TLVV GDGRY
Sbjct: 9 VSTSPIDGQKPGTSGLRKKVKVFKQPNYLENFVQATFNALTTEKVKGATLVVSGDGRYYS 68
Query: 267 KEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKY------KTLGGIVLTASHNPG 428
++ + I+K++AANGV ++ VGQN +LSTPAVS IIR+ K G +LTASHNPG
Sbjct: 69 EQAIQIIVKMAAANGVRRVWVGQNSLLSTPAVSAIIRERVGADGSKATGAFILTASHNPG 128
Query: 429 GADEDFGIKFNCSNGGPASDATTDAIYKLTTSIKQYKIVPDL-NCAIDKIDVHTFKVDQR 605
G EDFGIK+N NGGPA ++ TD IY+ T +IK+Y I DL I I + +F+ +
Sbjct: 129 GPTEDFGIKYNMENGGPAPESITDKIYENTKTIKEYPIAEDLPRVDISTIGITSFEGPEG 188
Query: 606 QFTVEVIDAVEDYV 647
+F VEV D+ +DYV
Sbjct: 189 KFDVEVFDSADDYV 202
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 186 bits (454), Expect = 9e-48
Identities = 98/194 (50%), Positives = 134/194 (69%), Gaps = 3/194 (1%)
Frame = +3
Query: 87 TVDTKPYEGQKPGTSGLRKKVKVFIQENYTENFIQCILD-VNKTSLIGSTLVVGGDGRYL 263
++ TKP EGQK GTSGLRKKVKVF+++NY N+IQ + + + +TLV+GGDGRY
Sbjct: 71 SLPTKPIEGQKTGTSGLRKKVKVFMEDNYLANWIQALFNSLPLEDYKNATLVLGGDGRYF 130
Query: 264 VKEVVDKIIKISAANGVSKLIVGQNGILSTPAVSYIIRKYKTLGGIVLTASHNPGGADED 443
KE IIKI+A NGV +++VG+ GILSTPAVS +IRK K GG +++ASHNPGG + D
Sbjct: 131 NKEASQIIIKIAAGNGVGQILVGKEGILSTPAVSAVIRKRKANGGFIMSASHNPGGPEYD 190
Query: 444 FGIKFNCSNGGPASDATTDAIYKLTTSIKQYKI--VPDLNCAIDKIDVHTFKVDQRQFTV 617
+GIKFN S+G PA + TD IY T SI + K+ +PD++ + ++ V + F+V
Sbjct: 191 WGIKFNYSSGQPAPETITDKIYGNTLSISEIKVAEIPDID--LSQVGVTKY----GNFSV 244
Query: 618 EVIDAVEDYVFVHE 659
EVID V DY+ + E
Sbjct: 245 EVIDPVSDYLELME 258
>At5g17530.2 68418.m02057 phosphoglucosamine mutase family protein
low similarity to phosphoglucomutase/phosphomannomutase
[Sphingomonas paucimobilis] GI:6103619; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 581
Score = 34.7 bits (76), Expect = 0.060
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Frame = +3
Query: 159 IQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQN 338
+ E F Q +L K + VG D R + +++ + S GVS L V Q
Sbjct: 85 VTEAIAAAFGQWLLHKKKAESRRLRVSVGHDSRISAQTLLEAV---SRGLGVSGLDVVQF 141
Query: 339 GILSTPAV--SYIIRKYKTL----GGIVLTASHNPGGADEDFGIKFNCSNGG 476
G+ STPA+ S + L G I++TASH P + G KF S+GG
Sbjct: 142 GLASTPAMFNSTLTEDESFLCPADGAIMITASHLPYNRN---GFKFFTSDGG 190
>At5g17530.1 68418.m02056 phosphoglucosamine mutase family protein
low similarity to phosphoglucomutase/phosphomannomutase
[Sphingomonas paucimobilis] GI:6103619; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 581
Score = 34.7 bits (76), Expect = 0.060
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Frame = +3
Query: 159 IQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQN 338
+ E F Q +L K + VG D R + +++ + S GVS L V Q
Sbjct: 85 VTEAIAAAFGQWLLHKKKAESRRLRVSVGHDSRISAQTLLEAV---SRGLGVSGLDVVQF 141
Query: 339 GILSTPAV--SYIIRKYKTL----GGIVLTASHNPGGADEDFGIKFNCSNGG 476
G+ STPA+ S + L G I++TASH P + G KF S+GG
Sbjct: 142 GLASTPAMFNSTLTEDESFLCPADGAIMITASHLPYNRN---GFKFFTSDGG 190
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 135 LRKKVKVFIQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVV 278
L KK Y ENFI + DV++T + +V+GGD L+ E++
Sbjct: 462 LYKKYNQLFDMAYAENFILPVGDVSETKSMYKEVVLGGDVWDLLDELM 509
>At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative (CHLH) nearly identical to magnesium chelatase
subunit GI:1154627 from [Arabidopsis thaliana]; contains
Pfam profile: PF02514 CobN/magnesium chelatase family
protein
Length = 1381
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 141 KKVKVFIQENYTENFIQCILDVNKTSLIGSTLVVGGDGRYLVKEVVDK 284
K V V ++ Y + + + +NKTS S VVG YLV+E+ DK
Sbjct: 79 KIVYVVLEAQYQSSLSEAVQSLNKTSRFASYEVVG----YLVEELRDK 122
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 147 VKVFIQENYTENFIQCILDVNKTSLIGS-TLVVGGDGRYLVKEVVDKIIKISAANGVSKL 323
+K F + N EN + C K S I S T DGR L+ G++K
Sbjct: 115 LKTFAESNLPENVLDCCKTFEKPSPIQSHTWPFLLDGRDLI--------------GIAKT 160
Query: 324 IVGQNGILSTPAVSYIIRKYKTLGG 398
G+ PA+ ++++K K +GG
Sbjct: 161 GSGKTLAFGIPAIMHVLKKNKKIGG 185
>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1311
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 210 KTSLIGSTLVVGGDGRYLVKEVVDKIIKISAANGVSKLIVGQNGILSTPAV 362
K + + S + +G L +VVD + + +SKL+VG +GI + A+
Sbjct: 1004 KLATLSSFAELSMNGIKLSSQVVDSLYALVKTPSLSKLLVGSSGIGTDGAI 1054
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,788
Number of Sequences: 28952
Number of extensions: 317146
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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