Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0772
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   2.0  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.4  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    26   4.5  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 245 SLRKRLLMQHRRGRGVAPVLVRRPLRSKQLRKLVVIH 135
           +LR   L  HR  R V P+L +RP   + L +   +H
Sbjct: 627 ALRSNSLRTHRDSRPVQPLLKQRPQLHRALTESATLH 663


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 179 RPLRSKQLRKLVVIHRTKFNCLSQ*RNLFR 90
           +PL S++L   V +H  K N LSQ   + R
Sbjct: 320 QPLESRKLHSKVDVHSKKLNALSQLNPILR 349


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 151 FRSCLDLNGLRTSTGATPRPRRCCISSRFLKECS*KGNLTPTSV 282
           F  CL+   ++ ST    + ++  I SRFL  C  + +L+P+S+
Sbjct: 275 FNDCLER--MKVSTRQYAKSQKKWIQSRFLPMCLAQQDLSPSSI 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,689
Number of Sequences: 5004
Number of extensions: 57138
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)