Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0772
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1090 - 27531805-27531989,27532137-27532395                       29   2.7  
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451...    29   4.7  
09_02_0398 + 8559332-8559718,8561264-8561386,8561537-8561581,856...    28   6.2  
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740...    28   6.2  
02_04_0035 + 19078267-19078479,19078588-19078674,19079792-190798...    28   6.2  
07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584     28   8.2  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   8.2  

>06_03_1090 - 27531805-27531989,27532137-27532395
          Length = 147

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 440 DNTVQGMRR*IVGGALWRDHLRGMQRI 520
           DN V G RR + GG  WR+  R  +R+
Sbjct: 36  DNRVGGRRRPVGGGGRWREEARARRRL 62


>02_03_0080 +
           14935664-14935796,14943858-14944175,14944352-14945199,
           14945249-14945521
          Length = 523

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
 Frame = -1

Query: 586 PTTQALLRGHW*FTTVLWDRLKNPLHPSQVITP*CTPDDLSPHTLHGIISIWALIELAAF 407
           P T   LR  W  TT+++DRL    HP +V+ P   P  L P  +  +    +LI+  + 
Sbjct: 308 PDTPQYLR--WSETTIMFDRLD---HPYRVVHPGRYPLVLDP-VVRNVKLRRSLIDGGSA 361

Query: 406 LSM----NMPDIDEPKM---PSLLPGGGEV--LSATEPEVMSIPI 299
           L++     + D+  P+M   PS  P  G +  LSAT    +++PI
Sbjct: 362 LNILFVKTLDDMQIPRMELKPSNAPFHGVISGLSATPLSQITLPI 406


>09_02_0398 +
           8559332-8559718,8561264-8561386,8561537-8561581,
           8562215-8562290,8562398-8562510,8562774-8562821,
           8563101-8563229
          Length = 306

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 441 IIPCKVCGDKSSGVHYGVI 497
           ++ C++CGD SSG+ +  I
Sbjct: 187 VVDCRICGDHSSGLRFAFI 205


>04_04_0051 -
           22371490-22371658,22372333-22372778,22373880-22374054,
           22374134-22374240,22374358-22374646,22374942-22375075,
           22375228-22375423,22375611-22375719,22375839-22375965
          Length = 583

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 148 WLLFIVRNSIV*VSKETFLGYFRPVVVFRESNSHRGYALV 29
           W L +V + ++ +    F+G +  VVV++E +  RG + V
Sbjct: 257 WPLVVVGSVLLAIVSSIFVGLYGAVVVYQEKSFQRGVSYV 296


>02_04_0035 +
           19078267-19078479,19078588-19078674,19079792-19079863,
           19080338-19080526,19080599-19080718,19081348-19081430,
           19081518-19081773,19081878-19082199,19086355-19086548,
           19087135-19087227,19089327-19089497,19089580-19089699,
           19090303-19090373,19090608-19090675,19091097-19091191
          Length = 717

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 454 LHGIISIWALIELAAFLSMNMPDIDEPKMPSLL-PGGGEVL 335
           LH ++S++A + LAA + M  PD      P ++ PG G  L
Sbjct: 298 LHSVLSVFAFLRLAAAIWMCSPDHITMYAPGVIGPGEGRSL 338


>07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584
          Length = 496

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 555 QCPRNKACVVGQGQPQPMPVLQTTEVPQTRHES 653
           +CPRN+A +V +G   P+  L  +   + +H++
Sbjct: 406 ECPRNRALLVREGAIPPLVALSQSGSARAKHKA 438


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 254 EKGTSHRH----RCRDAQSNGNGHHFRFRSGQHLAAAGQQRRH 370
           +KG  HRH    R R   S+G+ HH  +  G H     Q+RRH
Sbjct: 531 QKGRHHRHHHDHRHRHGHSHGD-HHHHYHGGHH-----QRRRH 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,912,603
Number of Sequences: 37544
Number of extensions: 450543
Number of successful extensions: 1256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)