Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0771
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408...    27   6.4  

>06_03_0930 -
           26038341-26038508,26039114-26039254,26040799-26040858,
           26040972-26041034,26041444-26041454,26041722-26041802,
           26042783-26043020,26043563-26043997
          Length = 398

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 24  AAAKFHCELQIEFVLLKTHGCF 89
           A +K +C+L+++ VLL  H CF
Sbjct: 287 ALSKENCKLELQGVLLTVHACF 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,662,225
Number of Sequences: 37544
Number of extensions: 124686
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)