Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0768
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0643 + 30818002-30818679 32 0.46
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 31 0.60
12_02_0589 + 20850249-20850491,20850583-20851839 31 0.80
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323... 31 0.80
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 31 1.1
09_06_0280 + 22010270-22011407,22011890-22013097 30 1.8
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 29 3.2
01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918 29 3.2
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 4.2
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 4.2
03_05_0753 - 27444843-27444995,27446814-27447005,27447099-27447248 28 5.6
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724... 28 7.4
05_06_0141 - 25964706-25965473 28 7.4
02_02_0183 + 7576901-7576908,7577666-7578176 28 7.4
10_01_0001 - 22485-22526,23308-23436,24346-24473,24801-24862,253... 27 9.8
06_03_0915 - 25929433-25930893 27 9.8
01_05_0287 - 20460956-20461282,20462051-20462201,20462285-204625... 27 9.8
>01_06_0643 + 30818002-30818679
Length = 225
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Frame = +3
Query: 396 EASRYQCSPGLAYDRESRVCMWADQVPECKNEEVANGFGCPA--PGEVSNAGSFSRHAHP 569
EAS AYD + M+ +V C CP PGE + S +
Sbjct: 29 EASSPTWGGRCAYDED--FMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYT 86
Query: 570 -EDCRKYYICPRGRCPRVTXCPIGN 641
E C + + R CPR + CP +
Sbjct: 87 GEPCPDFRVAARAACPRGSGCPFAH 111
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 20 TLVPGLSSQYEFEVFISVSGRPR--RSCRPRVLQMPRRLRFLPSPHLL 157
TL+ L+S F+ ++GR C PR + PR L +L SPH+L
Sbjct: 324 TLLRNLTSNLTFQEAYDMTGRILVVTVCSPRKHEPPRCLNYLTSPHVL 371
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 300 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRYRRFSVRLHRCRTSSI 163
A SSL T S S R ++ +WR+ R+ +R+FS ++C +S+
Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313
>08_02_0182 -
13930436-13931245,13931348-13931627,13931788-13932324,
13932482-13932579,13932678-13933118
Length = 721
Score = 31.1 bits (67), Expect = 0.80
Identities = 28/98 (28%), Positives = 42/98 (42%)
Frame = -1
Query: 443 LSVVGKSGAALIAGGFSVPAVPEDVALVFIREDAVQSRTVGSGDWGLELCPLSALNVVKV 264
+ V+ S A I + PA+ L ++ D+V ++ +GSG GL + L+ V
Sbjct: 200 IMVMTCSFAYYIVPSYLFPAISTISVLCWLYRDSVTAQQIGSGASGLGVGSF-GLDWNTV 258
Query: 263 VAVLGQVFGICGVESETVTAGFQFGYTVVALPVFVTGD 150
V LG V AGF T VA+P+ D
Sbjct: 259 VGFLGNPLASPAFAIFNVMAGFALS-TYVAVPILYWTD 295
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 430 PTTESPASACGLIRFRSAKTKK*QTDSAARPPVRSPTLARSVVTLIPKIAVNTTSVLEGV 609
PTT S +SA G SA + T S+ RP S +R+ P AV+ + E +
Sbjct: 61 PTTPSSSSAGGRPTTPSAAFARSTTPSSGRPTTPSSASSRAAGRAPPVAAVDAANAKENI 120
Query: 610 ARELRXAP 633
+R P
Sbjct: 121 MVTVRFRP 128
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 486 NEEVANGFGCPAPGEVSNAGSFSRHAH----PEDCRKYYIC 596
N + AN + CP PGE + S +++ ++ R Y+C
Sbjct: 275 NNQAANNWSCPTPGEARRSACISNNSYCHNVTDNYRSGYVC 315
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 279 ECGERTQLEPPISTPHCSRLYGIF 350
+ GERT L PP H R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167
>01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918
Length = 250
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -3
Query: 321 EWRLGARAVSSLRTQRC---EGSRSSRSSIWNLWR 226
+WR R LR+QRC EG RS + +WR
Sbjct: 156 KWRRSGRCQRGLRSQRCTAREGFRSKEEMLGIVWR 190
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 285 RTQRCEGSRSSRSSIWNLWRRKRDR 211
R RC G ++RS+ LWRR+R R
Sbjct: 20 RVSRCSGRPATRSAPSILWRRRRPR 44
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +3
Query: 384 CWNGEASRYQCSPGLAYDRESRVCMWADQVPECKNEEVANGFGCPAPGEVSNAGSFSRHA 563
CW G + RY+CSP VCM ++P + + P EV + G H
Sbjct: 77 CWRGLSRRYKCSPERTV---LSVCMLTGEMPRVQTSRLGKN-----PIEVDSDGGEDLHV 128
Query: 564 HPE 572
E
Sbjct: 129 DYE 131
>03_05_0753 - 27444843-27444995,27446814-27447005,27447099-27447248
Length = 164
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = -1
Query: 635 DGAXRNSRATPSRTDVVFTAIFGMSVTTERASVGDLTGGRAAESVCYFFVFALRNLISPH 456
D +SRA +T+ + A+ M ER S ++TG C L +S
Sbjct: 3 DATSSSSRAPRPKTEELDAALHAMGFEIERVSPAEVTGRLLVTPTCCQPFKVLHGGVSAL 62
Query: 455 ADAGLSVVG---KSGAALIAG 402
GL+ +G SG + +AG
Sbjct: 63 IAEGLASMGAHMASGYSRVAG 83
>06_03_0975 -
26471438-26472109,26472189-26472284,26472372-26472482,
26472494-26472530,26472566-26472576,26472674-26473050,
26474310-26474895
Length = 629
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 520 PPVRSPTLARSVVTLIPKIAVNTTSVLEGVARELRXAPSGTV 645
PP S + VT+ P + +T+ EGVA E+ A G +
Sbjct: 348 PPKDSKLVHHEHVTVTPHLGASTSEAQEGVALEIAEAVLGAL 389
>05_06_0141 - 25964706-25965473
Length = 255
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +3
Query: 435 DRESRVCMWADQVPECKNEEVANGFGCPA--PGEVSNAGSFSRHAHP-EDCRKYYICPRG 605
+ + M+ +V C + CP PGE + R A+ E C + P
Sbjct: 54 EADDEFMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGA 113
Query: 606 RCPRVTXCPIGN 641
CPR + CP +
Sbjct: 114 ACPRGSTCPFAH 125
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Frame = -3
Query: 465 QPTCRRGTLCRRQVRGCTDSGXXXXXXXXXXXRTCFHQGRCRTVSNSGEWRL-------- 310
+P +RG RR+ R C G C +G G +
Sbjct: 48 RPARQRGGGGRRRRRRCGGGGGGAARWIRQPLARCDRRGGAEAEGGDGTGDVEAEGGGGG 107
Query: 309 GARAVSSLRTQRCEGSRSSRSSIWNLWRRKR 217
G V + +R EG S + W WRR+R
Sbjct: 108 GGGGVGWMGMRRAEGGGSGSVARWRRWRRRR 138
>10_01_0001 -
22485-22526,23308-23436,24346-24473,24801-24862,
25388-25585,25807-25898,26941-26994
Length = 234
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 168 WKCDNGVAELKTCGNGLAFDATDSKYLTEN-CDYLHNVECGERTQLEPPIS 317
W C G E CG + A ++ + C Y + CG +L+PP S
Sbjct: 9 WACTGGSQEA-ICGPEASKLAIAVPTISSSSCSYFYRYRCGRYEELKPPSS 58
>06_03_0915 - 25929433-25930893
Length = 486
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 368 ALVFIREDAVQSRTVGSGDWGLELCPLSALNVVKVVAVLGQVFGI 234
AL+ +R D + +++G G+ L + L VV ++ V+G V+ +
Sbjct: 438 ALIALRLDK-EGKSLGKGERLLSIVMLGLAMVVSIIGVIGNVYSL 481
>01_05_0287 -
20460956-20461282,20462051-20462201,20462285-20462519,
20462796-20463006,20463122-20463258,20463339-20463467,
20464558-20465359
Length = 663
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Frame = +3
Query: 402 SRYQCSPGLAYDRESRVCMWADQVPECKNEEVANGFGCPA--------PGEVSNAGSFSR 557
+R +C+PG A + + + + + ANGFG A P V G R
Sbjct: 28 ARQECAPGGAVSGPALADNFVPAMDDLNSNVSANGFGTSAVGTTAGLNPNAVFGLGQCYR 87
Query: 558 HAHPEDCRKYYICPRGRCPR 617
P DC+ + R P+
Sbjct: 88 DLSPVDCKLCFAEVRSLLPK 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,008
Number of Sequences: 37544
Number of extensions: 433043
Number of successful extensions: 1506
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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